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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi03g01560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | AP2 | ||||||||
Protein Properties | Length: 432aa MW: 48888.5 Da PI: 7.9178 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.8 | 1.3e-18 | 59 | 105 | 2 | 51 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 y+GVr+++ +g+++AeIrdp+ ng r+++g+f+taeeAa a+++a+ Vradi03g01560.1 59 PYRGVRRRP-WGKFAAEIRDPTRNG--VRVWIGTFDTAEEAALAYDQAAF 105 59*******.**********98887..*********************96 PP | |||||||
2 | AP2 | 46.4 | 9.8e-15 | 328 | 378 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y GVr++ +gr++AeIrd + + +r++lg+f aeeAa a+++a+ ++g Vradi03g01560.1 328 CYIGVRRRA-SGRFAAEIRDaTR----KgTRVWLGTFSNAEEAALAYDQAAFLMRG 378 699***888.8*********442....34**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 4.1E-34 | 59 | 123 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-28 | 59 | 117 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.642 | 59 | 117 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-10 | 60 | 71 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-12 | 60 | 105 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-21 | 60 | 118 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.29E-21 | 67 | 116 | No hit | No description |
PRINTS | PR00367 | 1.7E-10 | 83 | 99 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-29 | 328 | 392 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-19 | 328 | 387 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.5E-11 | 328 | 378 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.836 | 328 | 386 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.81E-24 | 329 | 387 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.8E-26 | 329 | 387 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 432 aa Download sequence Send to blast |
MDFNSSFSHQ SLESHLNSWE ALFSFNNNAT NESSLSLQEQ TSDITDDGSN PQTKKERRPY 60 RGVRRRPWGK FAAEIRDPTR NGVRVWIGTF DTAEEAALAY DQAAFLTRGV LATLNFSAQV 120 VVESLQDMGF KALRNGVSPL LELKRMHVMR TKSRASRVKR GCSKLKPDPT AETVLVLEDL 180 GPEYLEQLLT FTSPVALTEF RLDNDDVARW SQCLDASLPK RERIKALSPA HIREEEDGVA 240 FCCVDKVILW VKVVYDKRIV LGKVYMHSDW GTLKETGDIL FEPFSSKDIC CDPFHDYLSF 300 DMIEHSRDPQ EPSEVIEAVE VVQSNKQCYI GVRRRASGRF AAEIRDATRK GTRVWLGTFS 360 NAEEAALAYD QAAFLMRGSC ALLNFPVKRV IESLHQLNYF ACNQACSPAL ELKNRHNMRR 420 KLSSKAKETK T* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-24 | 60 | 388 | 3 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-24 | 60 | 388 | 6 | 66 | ATERF1 |
3gcc_A | 2e-24 | 60 | 388 | 6 | 66 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression during the plant development, and/or mediated by stress factors and by components of stress signal transduction pathways. Seems to be a key integrator of ethylene and jasmonate signals in the regulation of ethylene/jasmonate-dependent defenses. Can mediate resistance to necrotizing fungi (Botrytis cinerea and Plectosphaerella cucumerina) and to soil borne fungi (Fusarium oxysporum conglutinans and Fusiarium oxysporum lycopersici), but probably not to necrotizing bacteria (Pseudomonas syringae tomato). {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12060224, ECO:0000269|PubMed:12509529, ECO:0000269|PubMed:15242170, ECO:0000269|PubMed:9851977}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi03g01560.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Ethylene induction is completely dependent on functional ETHYLENE-INSENSITIVE2 (EIN2), ETHYLENE-INSENSITIVE3 (EIN3), which is itself a transcription factor and CORONATIVE-INSENSITIVE1 (COI1) proteins. Induction by jasmonate, B.cinerea or F.oxysporum as well as the synergistic induction by ethylene and jasmonate requires EIN2 and COI1. Induction by methyl jasmonate (MeJA) is independent of JAR1. Induction by salicylic acid (SA) is dependent on NPR1 but not on PAD4. Seems not to be induced by Alternaria brassicicola. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12060224, ECO:0000269|PubMed:12509529, ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:15242170, ECO:0000269|PubMed:9851977}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014494963.1 | 1e-129 | ethylene-responsive transcription factor ERF094-like | ||||
Swissprot | Q8LDC8 | 3e-42 | ERF92_ARATH; Ethylene-responsive transcription factor 1B | ||||
TrEMBL | A0A371E8R0 | 1e-151 | A0A371E8R0_MUCPR; Ethylene-responsive transcription factor 1B (Fragment) | ||||
STRING | XP_007162536.1 | 1e-110 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF311 | 33 | 199 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31230.1 | 5e-28 | ethylene-responsive element binding factor 15 |