PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g00150.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family G2-like
Protein Properties Length: 420aa    MW: 46831.4 Da    PI: 8.037
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g00150.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.11.5e-31245299155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      k+r+rWt++LHe+Fve+v++LGGse+AtPk+il++m+ +gLt+ hvkSHLQkYR+
  Vradi03g00150.1 245 KTRIRWTKDLHEKFVECVNRLGGSEQATPKAILKMMDTDGLTIFHVKSHLQKYRI 299
                      68****************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.655242302IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.3E-28243300IPR009057Homeodomain-like
SuperFamilySSF466894.84E-17243299IPR009057Homeodomain-like
TIGRFAMsTIGR015574.2E-23245300IPR006447Myb domain, plants
PfamPF002495.0E-9249298IPR001005SANT/Myb domain
PfamPF143799.2E-20330376IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MNDNKVHWGG LIQQSHGLSG DFNSEFGNHY CQYFDIRQPW NMGPLAMVGR EATDQFPNIG  60
HVKSSGTIIS RFESPASAFY AAENCMGFSE YDCQLGVQSQ LCKINDLEFP LYQSPRENLI  120
LDTANQPDSS YDFSNTLQSI VKSQFNNNQC RVSPEKSNKI SCGNFPTTKF LPIEQQKLFI  180
DGVIRGSSFP NNGIQDRTVA RGSFDLPVAH MRFSSQIEKL SPTLSAGSVS TVGNSASNGA  240
AVSSKTRIRW TKDLHEKFVE CVNRLGGSEQ ATPKAILKMM DTDGLTIFHV KSHLQKYRIA  300
KFIPEPSQGK SDKRTHIKNV HHLDVKTGLQ IREALKLQLD AQRCLHEQLE VQRKLQLRIE  360
EQGRQLKKMF DQQQKTSNNL SNTQDSGTDE TTITHKDGEV SASEGANNSF FTSQASPSQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-23245302259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-23245302259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-23245302158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-23245302158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-23245302158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-23245302158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-23245302259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-23245302259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-23245302259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-23245302259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-23245302259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-23245302259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi03g00150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312050.0KT031205.1 Glycine max clone HN_CCL_162 MYB/HD-like transcription factor (Glyma19g32850.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014495489.10.0uncharacterized protein LOC106757352
TrEMBLA0A1S3TP040.0A0A1S3TP04_VIGRR; uncharacterized protein LOC106757352
STRINGXP_007162313.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37403465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.11e-66G2-like family protein