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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi03g00150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | G2-like | ||||||||
Protein Properties | Length: 420aa MW: 46831.4 Da PI: 8.037 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.1 | 1.5e-31 | 245 | 299 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LHe+Fve+v++LGGse+AtPk+il++m+ +gLt+ hvkSHLQkYR+ Vradi03g00150.1 245 KTRIRWTKDLHEKFVECVNRLGGSEQATPKAILKMMDTDGLTIFHVKSHLQKYRI 299 68****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.655 | 242 | 302 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.3E-28 | 243 | 300 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.84E-17 | 243 | 299 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.2E-23 | 245 | 300 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.0E-9 | 249 | 298 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 9.2E-20 | 330 | 376 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MNDNKVHWGG LIQQSHGLSG DFNSEFGNHY CQYFDIRQPW NMGPLAMVGR EATDQFPNIG 60 HVKSSGTIIS RFESPASAFY AAENCMGFSE YDCQLGVQSQ LCKINDLEFP LYQSPRENLI 120 LDTANQPDSS YDFSNTLQSI VKSQFNNNQC RVSPEKSNKI SCGNFPTTKF LPIEQQKLFI 180 DGVIRGSSFP NNGIQDRTVA RGSFDLPVAH MRFSSQIEKL SPTLSAGSVS TVGNSASNGA 240 AVSSKTRIRW TKDLHEKFVE CVNRLGGSEQ ATPKAILKMM DTDGLTIFHV KSHLQKYRIA 300 KFIPEPSQGK SDKRTHIKNV HHLDVKTGLQ IREALKLQLD AQRCLHEQLE VQRKLQLRIE 360 EQGRQLKKMF DQQQKTSNNL SNTQDSGTDE TTITHKDGEV SASEGANNSF FTSQASPSQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-23 | 245 | 302 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-23 | 245 | 302 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 2e-23 | 245 | 302 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-23 | 245 | 302 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-23 | 245 | 302 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-23 | 245 | 302 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-23 | 245 | 302 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-23 | 245 | 302 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-23 | 245 | 302 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-23 | 245 | 302 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-23 | 245 | 302 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-23 | 245 | 302 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi03g00150.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031205 | 0.0 | KT031205.1 Glycine max clone HN_CCL_162 MYB/HD-like transcription factor (Glyma19g32850.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014495489.1 | 0.0 | uncharacterized protein LOC106757352 | ||||
TrEMBL | A0A1S3TP04 | 0.0 | A0A1S3TP04_VIGRR; uncharacterized protein LOC106757352 | ||||
STRING | XP_007162313.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3740 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06800.1 | 1e-66 | G2-like family protein |