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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi03g00100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | SBP | ||||||||
Protein Properties | Length: 293aa MW: 31487.9 Da PI: 8.2453 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 87.9 | 1.2e-27 | 17 | 78 | 9 | 77 |
---TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 9 adlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +dls+ak y++rhkvC +hsk+p+v+v+gl+qr fh+l efD++krsCrrrLa+hnerrrk+ Vradi03g00100.1 17 NDLSDAKAYYSRHKVCGMHSKSPTVIVAGLQQR-------FHQLPEFDQGKRSCRRRLAGHNERRRKPP 78 79****************************997.......7**************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 20.23 | 7 | 77 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 5.4E-17 | 17 | 64 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.4E-18 | 17 | 76 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 6.93E-26 | 18 | 82 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:2000025 | Biological Process | regulation of leaf formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MGSDAAATKL SSSESLNDLS DAKAYYSRHK VCGMHSKSPT VIVAGLQQRF HQLPEFDQGK 60 RSCRRRLAGH NERRRKPPPS SLLTSRYARL SSSAFDNSGR GGNFLMELAS YPKLSLRNSL 120 PTPRSSELGP GSQTSTLSWH GNSETPADIF LQGSVGGTSF AGPGHPPGES YTGVTDSSCA 180 LSLLSSQTWG SRNTAPSLGL NNMINFNGTP MTQLTASSHG ASLHELPNTS WCFKGIDSGN 240 CSPEVVPDLG LGHISQPLNG QLHGELDLSQ QGRRHYMDLE QSREYESAHW SL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-20 | 18 | 76 | 19 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00307 | DAP | Transfer from AT2G42200 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi03g00100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014496166.1 | 0.0 | squamosa promoter-binding-like protein 9 | ||||
TrEMBL | A0A1S3TQU8 | 0.0 | A0A1S3TQU8_VIGRR; squamosa promoter-binding-like protein 9 | ||||
STRING | GLYMA19G32800.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4208 | 33 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42200.1 | 1e-50 | squamosa promoter binding protein-like 9 |