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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0393s00030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | DBB | ||||||||
Protein Properties | Length: 222aa MW: 25210.8 Da PI: 7.4343 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.2 | 1.2e-06 | 4 | 32 | 5 | 34 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e+ ++lfC ++ lC C ++ H Vradi0393s00030.1 4 LCDVCESAAAILFCAADEAALCSACDQK-H 32 7*************************98.7 PP | |||||||
2 | zf-B_box | 28.6 | 2.9e-09 | 61 | 100 | 3 | 38 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38 ++C+ +e+ ++ ++Ce +++ lC +C + H g H+ Vradi0393s00030.1 61 VPRCDICENAPAFFYCEVDGSSLCLQCDMIVHVGgkrtHE 100 689**************************99966666776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.314 | 1 | 32 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 0.13 | 1 | 36 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.15E-4 | 3 | 30 | No hit | No description |
SuperFamily | SSF57845 | 9.84E-5 | 58 | 95 | No hit | No description |
PROSITE profile | PS50119 | 9.343 | 59 | 104 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.4E-10 | 59 | 104 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.7E-7 | 61 | 100 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.84E-7 | 62 | 101 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MRTLCDVCES AAAILFCAAD EAALCSACDQ KHLFALEIQI HMCNKLASRH IRVGLADPTD 60 VPRCDICENA PAFFYCEVDG SSLCLQCDMI VHVGGKRTHE RYLLLRQRVE FPGDKPAQME 120 ELGLQPLDQN EFRRDENQFL KLKSRDSQQN HSILPVPRQE NNIDGHRKLD KKLIDLNTRP 180 LRLNGPAPNN QTKSMRGNSY FHTNEMHNEG RLKSLVYTKF S* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis (PubMed:18540109). Acts as a negative regulator of blue light-mediated inhibition of hypocotyl elongation through increase of bioactive gibberellin levels (PubMed:20872270). Acts as a repressor of thermotolerance by modulating expression of a set of heat shock-responsive genes (PubMed:23238922). {ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:20872270, ECO:0000269|PubMed:23238922}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0393s00030.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By blue light (PubMed:20872270) and heat shock (at protein level) (PubMed:23238922). {ECO:0000269|PubMed:20872270, ECO:0000269|PubMed:23238922}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT092206 | 1e-166 | BT092206.1 Soybean clone JCVI-FLGm-10I4 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017432413.1 | 1e-153 | PREDICTED: B-box zinc finger protein 18 isoform X1 | ||||
Swissprot | Q9SJU5 | 3e-69 | BBX18_ARATH; B-box zinc finger protein 18 | ||||
TrEMBL | A0A4D6LJA2 | 1e-143 | A0A4D6LJA2_VIGUN; Zinc finger protein CONSTANS | ||||
STRING | XP_007131751.1 | 1e-124 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2734 | 33 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G21320.1 | 1e-71 | DBB family protein |
Publications ? help Back to Top | |||
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