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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0364s00080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | DBB | ||||||||
Protein Properties | Length: 256aa MW: 27574.1 Da PI: 5.0051 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.3 | 1.1e-06 | 4 | 47 | 5 | 42 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ +e e++ C ++ lC +C ++ H H++vpl Vradi0364s00080.1 4 QCNVCEAAEAKVLCCADEAALCWQCDEKVHAAnklaskHQRVPL 47 7******99*********************66899999999986 PP | |||||||
2 | zf-B_box | 26.7 | 1.1e-08 | 54 | 95 | 3 | 38 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 ++kC+ ++e +fC +++ l+C++C l++H H+ Vradi0364s00080.1 54 MPKCDICQEALGYFFCLEDRALFCRKCDLAIHTAnayvsgHQ 95 799*******9*********************5455666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.751 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 8.65E-9 | 3 | 47 | No hit | No description |
SMART | SM00336 | 6.3E-11 | 4 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.7E-5 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.8E-15 | 52 | 99 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.987 | 52 | 99 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.7E-6 | 54 | 95 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.83E-9 | 55 | 99 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MKIQCNVCEA AEAKVLCCAD EAALCWQCDE KVHAANKLAS KHQRVPLSTS SSHMPKCDIC 60 QEALGYFFCL EDRALFCRKC DLAIHTANAY VSGHQRFLLT GVRVGLEATE PGASSSSLKS 120 DSGEKISDTK SSSISRKVST EPQNSDYNEM LPNEGGGVGG FPPAKESFGG GSTVGNISQW 180 TIDEFIGLNE FSQNYDYMEG STRSLDSSLV IDKLCVVVLL TCAGENRTGM GPIMSAKEKV 240 TFSRLQALES DRLID* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0364s00080.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:18182030}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014523153.1 | 1e-151 | B-box zinc finger protein 22 isoform X1 | ||||
Swissprot | Q9SYM2 | 3e-74 | BBX22_ARATH; B-box zinc finger protein 22 | ||||
TrEMBL | A0A1S3VXQ7 | 1e-149 | A0A1S3VXQ7_VIGRR; B-box zinc finger protein 22 isoform X1 | ||||
STRING | XP_007149516.1 | 1e-137 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4566 | 34 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78600.2 | 4e-74 | light-regulated zinc finger protein 1 |