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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0349s00140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 322aa MW: 37194.1 Da PI: 5.085 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.3 | 3e-19 | 92 | 145 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq++ Le+ F +++++ e++ +LAk+lgL+ rqV +WFqNrRa++k Vradi0349s00140.1 92 KKRRLSVEQVQFLEKSFDEENKLEPERKIRLAKELGLQPRQVAIWFQNRRARWK 145 56689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 129.1 | 1.9e-41 | 91 | 183 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrls eqv++LE+sF+ee+kLeperK +la+eLglqprqva+WFqnrRAR+ktkq+Ekdy++L+++y+ lk++ + L +e+++L++e++ Vradi0349s00140.1 91 EKKRRLSVEQVQFLEKSFDEENKLEPERKIRLAKELGLQPRQVAIWFQNRRARWKTKQMEKDYDSLHACYNDLKASYDDLLREKDKLQAEVA 182 69**************************************************************************************9997 PP HD-ZIP_I/II 93 e 93 + Vradi0349s00140.1 183 K 183 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.11E-19 | 79 | 149 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.572 | 87 | 147 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-19 | 90 | 151 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.56E-18 | 92 | 148 | No hit | No description |
Pfam | PF00046 | 1.5E-16 | 92 | 145 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-20 | 94 | 154 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.9E-5 | 118 | 127 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 122 | 145 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.9E-5 | 127 | 143 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.1E-15 | 147 | 188 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MLSLFPHLIH HRHHHHQLLP PQALDFYSFT SSTYFNTVDH THGLPLRIQH GSRSIVSFGG 60 VQGGKGCKES FFLPYDDNGD EDTDEYFHQP EKKRRLSVEQ VQFLEKSFDE ENKLEPERKI 120 RLAKELGLQP RQVAIWFQNR RARWKTKQME KDYDSLHACY NDLKASYDDL LREKDKLQAE 180 VAKLSEKVFE REKLEEGNLY RAETKGFQEP LQKSMIDSAS EGEGSKVDIS SAKSDMFDSS 240 ESPRYTDGVH SALLETGDSS YVFEPDQSDV SQDEGDNLSK TLLPHYMFPK LEDVGYSDQP 300 HNSCHFGFPE EEDQAIWSWS Y* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 139 | 147 | RRARWKTKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0349s00140.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014522235.1 | 0.0 | homeobox-leucine zipper protein ATHB-13 | ||||
TrEMBL | A0A1S3VV97 | 0.0 | A0A1S3VV97_VIGRR; homeobox-leucine zipper protein ATHB-13 | ||||
STRING | XP_007138213.1 | 1e-173 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1500 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 5e-43 | homeobox 1 |