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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0335s00060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C3H | ||||||||
Protein Properties | Length: 426aa MW: 47341.4 Da PI: 5.8497 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17 | 1.1e-05 | 130 | 153 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k C+ff++ C++G++C+ +Hg Vradi0335s00060.1 130 KVQMCKFFLQ-QRCRFGSNCRLSHG 153 6678******.*********98887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 9.7E-5 | 128 | 154 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.46 | 128 | 155 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-5 | 128 | 153 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-5 | 129 | 154 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00443 | 0.0013 | 280 | 328 | IPR000467 | G-patch domain |
Pfam | PF01585 | 2.4E-7 | 282 | 306 | IPR000467 | G-patch domain |
PROSITE profile | PS50174 | 9.535 | 282 | 302 | IPR000467 | G-patch domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 426 aa Download sequence Send to blast |
MLKFGICAVL NICRLVTPKI SMAVVHEELV QAIKDAEEGL FHLKRARLLQ EADAVLHNTN 60 IFAEEEKVEL LDPRDVEPEP LEGKSHSVGS KCRFRHIDGR WYNGQVVQLD NSVAKVSFLT 120 PTSENMLNTK VQMCKFFLQQ RCRFGSNCRL SHGVDVHLSA LKKFVPTIWK QSLVGSSIWA 180 VSTANSGTWR EAELESWDEK AGVGQVVFRD DGSTVKLGAE QMTLSEHAEV SDSESDSSIQ 240 QSGSSDYEED EESQGLGFLE STNLQRGVQT ETATFATWEN HTRGIASKMM ANMGYREGMG 300 LGVTAKEEEE STSDVFALIN NQLAMHSEAF GGGSTKKQQS KGSEEGKKVD RRALVAYEEE 360 VKDLKMKVEK LEQIVNVNKK EKAVYEAAMR KLNETRKALA DAEAVHASAS NAVVSKEKEK 420 RWLKF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0335s00060.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017406173.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 18 | ||||
Swissprot | Q6K687 | 1e-150 | C3H18_ORYSJ; Zinc finger CCCH domain-containing protein 18 | ||||
TrEMBL | A0A0L9T697 | 0.0 | A0A0L9T697_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3S701 | 0.0 | A0A0S3S701_PHAAN; Uncharacterized protein | ||||
STRING | XP_008220637.1 | 1e-178 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10129 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24830.1 | 1e-101 | C3H family protein |
Publications ? help Back to Top | |||
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