PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0335s00060.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 426aa    MW: 47341.4 Da    PI: 5.8497
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0335s00060.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH171.1e-05130153226
                        -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                        k   C+ff++   C++G++C+ +Hg
  Vradi0335s00060.1 130 KVQMCKFFLQ-QRCRFGSNCRLSHG 153
                        6678******.*********98887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003569.7E-5128154IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.46128155IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5128153IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-5129154IPR000571Zinc finger, CCCH-type
SMARTSM004430.0013280328IPR000467G-patch domain
PfamPF015852.4E-7282306IPR000467G-patch domain
PROSITE profilePS501749.535282302IPR000467G-patch domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MLKFGICAVL NICRLVTPKI SMAVVHEELV QAIKDAEEGL FHLKRARLLQ EADAVLHNTN  60
IFAEEEKVEL LDPRDVEPEP LEGKSHSVGS KCRFRHIDGR WYNGQVVQLD NSVAKVSFLT  120
PTSENMLNTK VQMCKFFLQQ RCRFGSNCRL SHGVDVHLSA LKKFVPTIWK QSLVGSSIWA  180
VSTANSGTWR EAELESWDEK AGVGQVVFRD DGSTVKLGAE QMTLSEHAEV SDSESDSSIQ  240
QSGSSDYEED EESQGLGFLE STNLQRGVQT ETATFATWEN HTRGIASKMM ANMGYREGMG  300
LGVTAKEEEE STSDVFALIN NQLAMHSEAF GGGSTKKQQS KGSEEGKKVD RRALVAYEEE  360
VKDLKMKVEK LEQIVNVNKK EKAVYEAAMR KLNETRKALA DAEAVHASAS NAVVSKEKEK  420
RWLKF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0335s00060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017406173.10.0PREDICTED: zinc finger CCCH domain-containing protein 18
SwissprotQ6K6871e-150C3H18_ORYSJ; Zinc finger CCCH domain-containing protein 18
TrEMBLA0A0L9T6970.0A0A0L9T697_PHAAN; Uncharacterized protein
TrEMBLA0A0S3S7010.0A0A0S3S701_PHAAN; Uncharacterized protein
STRINGXP_008220637.11e-178(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1012922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24830.11e-101C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]