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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0332s00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | FAR1 | ||||||||
Protein Properties | Length: 255aa MW: 29460.1 Da PI: 6.3585 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 85.8 | 6.8e-27 | 77 | 167 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +Y++++GF+vr++++++s+ n++++ ++fvCskeg+r+++ +++++ + + tr gC+a++++ +++ gkw+vtk+++eHnH+l+ Vradi0332s00010.1 77 EFYIAYGRRIGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYVHRKDR-VlpPPPATREGCQAMIRLALRDGGKWVVTKFVKEHNHKLM 167 6******************************************99883333.2448899*******************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.3E-24 | 77 | 167 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MDHESGQGFD SDDSDLDMQA EISEKHQKLD EFSKNLELCG SEDEKFVELP ATEIPTDIEA 60 VEPFIGMEFS SREEAREFYI AYGRRIGFTV RIHHNRRSRV NNQVIGQDFV CSKEGFRAKK 120 YVHRKDRVLP PPPATREGCQ AMIRLALRDG GKWVVTKFVK EHNHKLMSPS KVPWRGSGKH 180 LVSEDEKDRR IRELSLELYN ERQKCKRRCA AYEEQLNMIL NDLEKHTEHI SEKVAAVVRS 240 IREIEEEKSD SDSG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0332s00010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014521907.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 isoform X1 | ||||
Refseq | XP_022631925.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 isoform X1 | ||||
Refseq | XP_022631926.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 isoform X1 | ||||
Refseq | XP_022631927.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 isoform X1 | ||||
TrEMBL | A0A1S3VUQ2 | 0.0 | A0A1S3VUQ2_VIGRR; protein FAR1-RELATED SEQUENCE 5 isoform X1 | ||||
STRING | XP_007150429.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8861 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 2e-44 | FAR1 family protein |