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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0308s00040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 286aa MW: 32424.4 Da PI: 6.1767 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57 | 3.3e-18 | 76 | 129 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k Vradi0308s00040.1 76 KKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 129 456899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 132.5 | 1.5e-42 | 75 | 165 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ eqvk+LE+sFe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lkr+y+++k++n++L++++++L++e+ Vradi0308s00040.1 75 EKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYESVKSDNDALQTQNQKLQAEV 165 69**************************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.33E-19 | 67 | 133 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.394 | 71 | 131 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.8E-18 | 74 | 135 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.6E-15 | 76 | 129 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.53E-16 | 76 | 132 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-19 | 78 | 138 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.1E-5 | 102 | 111 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 106 | 129 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.1E-5 | 111 | 127 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.3E-14 | 131 | 165 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009744 | Biological Process | response to sucrose | ||||
GO:0048826 | Biological Process | cotyledon morphogenesis | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MAFFPANFML QTPHHDDHQP PPSLTSILPS CTPQEYHGGV TFLGKRSMSF SSGIEHGEEA 60 NAEEDLSDDG SQAGEKKRRL NMEQVKTLEK SFELGNKLEP ERKMQLARAL GLQPRQIAIW 120 FQNRRARWKT KQLEKDYDLL KRQYESVKSD NDALQTQNQK LQAEVIFVVQ ILALKSREPT 180 ESINLNKETE GSCSNRSENS SDIKLDISRT PAIDSPLSTH QPSRTLFPSS ARPAGVAQLF 240 QTSSRPDLPC QKIDQMVKEE SLSNMFCAMD DQSGFWPWLE QQHFN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 123 | 131 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00225 | DAP | Transfer from AT1G69780 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0308s00040.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014492595.1 | 0.0 | homeobox-leucine zipper protein ATHB-13-like isoform X2 | ||||
Swissprot | Q8LC03 | 1e-120 | ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13 | ||||
TrEMBL | A0A1S3TFQ0 | 0.0 | A0A1S3TFQ0_VIGRR; homeobox-leucine zipper protein ATHB-13-like isoform X2 | ||||
STRING | XP_007157668.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1271 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 1e-118 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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