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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi02g14460.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NF-YA | ||||||||
Protein Properties | Length: 290aa MW: 32584.5 Da PI: 9.4549 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 102.3 | 4.6e-32 | 135 | 191 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e ekk+ +++rkpylheSRh hA+rR+Rg+gGrF Vradi02g14460.1 135 EEPVYVNAKQYHGILRRRQSRAKAELEKKV-IRNRKPYLHESRHLHAMRRARGNGGRF 191 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 5.5E-37 | 133 | 194 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.811 | 134 | 194 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 6.1E-28 | 136 | 191 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.5E-24 | 137 | 159 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 139 | 159 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 2.5E-24 | 168 | 191 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MREKISKMPG KPDCDDYGEQ IQFHPWWRSI GENASKSSSA DRLNGSPSLP GTDKTGGKEY 60 QNIKHDLSSI SFSMDKYLAP NPHTEFVGHS VVLTSPYSDA QYGQILTTYG QQVMINPPLY 120 GMHQARMPLP LEMEEEPVYV NAKQYHGILR RRQSRAKAEL EKKVIRNRKP YLHESRHLHA 180 MRRARGNGGR FLNTKKLENN SSSVTSDEGN NSGANPSANS FNTLHRPTNN ENLASSNMVQ 240 DMQRVQSFNN GYHNGNCLTA LYLSQVNGKK EGGDYFGEGL NLIQLMMLY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 1e-20 | 135 | 195 | 2 | 62 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi02g14460.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014493349.1 | 0.0 | nuclear transcription factor Y subunit A-9 | ||||
Refseq | XP_014493350.1 | 0.0 | nuclear transcription factor Y subunit A-9 | ||||
Refseq | XP_014493351.1 | 0.0 | nuclear transcription factor Y subunit A-9 | ||||
Swissprot | Q945M9 | 2e-43 | NFYA9_ARATH; Nuclear transcription factor Y subunit A-9 | ||||
TrEMBL | A0A1S3THW8 | 0.0 | A0A1S3THW8_VIGRR; nuclear transcription factor Y subunit A-9 | ||||
STRING | XP_007133814.1 | 1e-171 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8962 | 31 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12840.4 | 4e-36 | nuclear factor Y, subunit A1 |
Publications ? help Back to Top | |||
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