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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi02g14420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C3H | ||||||||
Protein Properties | Length: 641aa MW: 68828.6 Da PI: 6.0921 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.5 | 2.1e-07 | 279 | 299 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg Vradi02g14420.1 279 PCPDFRK-GACRRGDMCEYAHG 299 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00204 | 2.91E-14 | 9 | 135 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 2.9E-17 | 9 | 137 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 1.87E-16 | 10 | 137 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 260 | 10 | 40 | IPR002110 | Ankyrin repeat |
Pfam | PF12796 | 2.1E-9 | 19 | 123 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.53 | 57 | 87 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 16.892 | 57 | 158 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.015 | 92 | 124 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.14 | 92 | 127 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 4.0E-6 | 274 | 300 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.6E-5 | 279 | 299 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.582 | 279 | 301 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.4E-4 | 279 | 301 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 307 | 337 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 35 | 309 | 332 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 641 aa Download sequence Send to blast |
MKTLTVNTED SFSSLLELAS NNDIEGFKVL LEKDPSAINE VGFWYGRQNG SKQIVLEHRT 60 PLMVAATYGS NDVLKLILMC PEADVNFACG ANKTTALHCA ASGGSANAVE TVKLLLSAGA 120 DASCMDAYGN RPVDVIVVPP KLQEMKPVLE ELLSDSASDG SIGGSIGELS VPVSVNSSSP 180 GSPNGLPYSP SDSPPSPVVA KFTEAAIGSL SEKKEYPIDP SLPDIKNSIY ATDEFRMFSF 240 KVRPCSRAYS HDWTECPFVH PGENARRRDP RKFHYSCVPC PDFRKGACRR GDMCEYAHGV 300 FECWLHPAQY RTRLCKDGTS CNRRVCFFAH TAEELRPLYV STGSAVPSPR SSASAPNVMD 360 MAAAMSLLPG SPSAVSSMSP SHFGQPMSPS ANGMSLSSGA WAQPNVPALH LPGSNLQSSR 420 LRSSLSARDI PPEDLNGMLD LDGHQHPLND LSCYLQPRPG AGSVSRSGRS KTLTPANLEE 480 LFSAEISSSP RYSDPAAASV FSPTHKSAVL NQFQQIQSML SPINTNLLSP KSVDHPLLQA 540 SFGVSSSGRM SPRINGDELG GKMRRSSSFE LKHNGEEPDL SWVQSLVKES PPEMMKEKFA 600 SPLPTAPSAD GPNSNPQIES IDHSVLGAWL EQMQLDQLVV * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi02g14420.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014494004.1 | 0.0 | zinc finger CCCH domain-containing protein 30-like | ||||
Swissprot | P93755 | 0.0 | C3H30_ARATH; Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | A0A1S3TJP9 | 0.0 | A0A1S3TJP9_VIGRR; zinc finger CCCH domain-containing protein 30-like | ||||
STRING | XP_007133821.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1732 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Publications ? help Back to Top | |||
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