![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vradi02g13360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 415aa MW: 45802.1 Da PI: 6.5221 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 89.1 | 4e-28 | 302 | 352 | 1 | 51 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQ Vradi02g13360.1 302 KARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQ 352 68************************************************* PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.487 | 299 | 359 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.16E-12 | 299 | 353 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.8E-23 | 300 | 352 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.3E-23 | 302 | 352 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.3E-5 | 304 | 353 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 415 aa Download sequence Send to blast |
MRTVTHNQTA AAVFPASRRW SEVGDEMEGV RNGCDEMGGF CHEHFLLNSF CHSLSLITRE 60 KMASQAELSM EYKPYTYSTL LKSFADQTDQ TYKLEDFLSR LEEERLKIDA FKRELPLCMQ 120 LLTNAVDASR QQLQTFRSNQ GTRPILEEFI PIKHPNSQES TEKASNISDK ASWMTSAQLW 180 SQASEGTKPK STITSPKKSA DTGFSVSPRL ALDSKRRNGG AFLPFSKERN ACQGMGDLPE 240 LGLASSESEM EVKKCEETEK CSKRENSGKA GSFEGIVDQG KIAAIATEAQ TTNTTTTTTG 300 RKARRCWSPD LHRRFVNALQ MLGGSQVATP KQIRELMKVD GLTNDEVKSH LQTAPHTQSS 360 PESDVRSGGD RSESIEDGKS ESGSWKGNGE KKGLAALRDQ EGEDSTGSEI TLRF* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vradi02g13360.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_014493481.1 | 0.0 | myb family transcription factor EFM | ||||
Swissprot | Q9ZQ85 | 1e-89 | EFM_ARATH; Myb family transcription factor EFM | ||||
TrEMBL | A0A1S3TI95 | 0.0 | A0A1S3TI95_VIGRR; myb family transcription factor EFM | ||||
STRING | XP_007138330.1 | 1e-180 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5466 | 34 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G03500.1 | 1e-86 | G2-like family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|