PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g09730.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family FAR1
Protein Properties Length: 187aa    MW: 21263 Da    PI: 7.834
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g09730.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR160.36e-1945130191
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                      kfY +YA ++GF v +++skk k+n+ ++  ++vCs+egk  ++ k    e +t+a++  +C  ++++ ++ d+ w++++++l+H+H+l+p
  Vradi02g09730.1  45 KFYTNYAITCGFVVMTRSSKKDKDNN-VYYLRLVCSREGKYVSSIKP---EVKTHASQTYQCPTSITIGRK-DNYWVIKSVVLDHSHDLCP 130
                      6**************99999986665.**************999888...99*****************99.9****************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-1645130IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MMATSTSHVN DLPHCYANGD EPNQTFMDNE PRINMCFDSM EDANKFYTNY AITCGFVVMT  60
RSSKKDKDNN VYYLRLVCSR EGKYVSSIKP EVKTHASQTY QCPTSITIGR KDNYWVIKSV  120
VLDHSHDLCP NTSKLIPRNR KLSMQAKHTL QVNDDVGVRI NKSFLSIVSD VGGFENMEFV  180
ERDARN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g09730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014492560.11e-127protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A1S3TFL51e-126A0A1S3TFL5_VIGRR; protein FAR1-RELATED SEQUENCE 5-like
STRINGXP_007134998.11e-44(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.13e-13FAR1 family protein