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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi02g09730.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | FAR1 | ||||||||
Protein Properties | Length: 187aa MW: 21263 Da PI: 7.834 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 60.3 | 6e-19 | 45 | 130 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 kfY +YA ++GF v +++skk k+n+ ++ ++vCs+egk ++ k e +t+a++ +C ++++ ++ d+ w++++++l+H+H+l+p Vradi02g09730.1 45 KFYTNYAITCGFVVMTRSSKKDKDNN-VYYLRLVCSREGKYVSSIKP---EVKTHASQTYQCPTSITIGRK-DNYWVIKSVVLDHSHDLCP 130 6**************99999986665.**************999888...99*****************99.9****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.3E-16 | 45 | 130 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MMATSTSHVN DLPHCYANGD EPNQTFMDNE PRINMCFDSM EDANKFYTNY AITCGFVVMT 60 RSSKKDKDNN VYYLRLVCSR EGKYVSSIKP EVKTHASQTY QCPTSITIGR KDNYWVIKSV 120 VLDHSHDLCP NTSKLIPRNR KLSMQAKHTL QVNDDVGVRI NKSFLSIVSD VGGFENMEFV 180 ERDARN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi02g09730.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014492560.1 | 1e-127 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A1S3TFL5 | 1e-126 | A0A1S3TFL5_VIGRR; protein FAR1-RELATED SEQUENCE 5-like | ||||
STRING | XP_007134998.1 | 1e-44 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF21 | 14 | 477 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G15090.1 | 3e-13 | FAR1 family protein |