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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi02g07200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | YABBY | ||||||||
Protein Properties | Length: 208aa MW: 23345.5 Da PI: 8.6823 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 91.4 | 2.2e-28 | 52 | 184 | 20 | 170 |
YABBY 20 tilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvp 113 + vsvP++sl+++vtvrCGhC++llsvn+ + q + ++ ++++++ +ee + k+ +++++ ++ + e ++e pr+p Vradi02g07200.1 52 YPIHVSVPYNSLLTIVTVRCGHCANLLSVNMGASLQPFPPQDP------QSQKQHISFEEPSSKELGSSSSKCNKIAPF----EAVEHEPPRIP 135 4578***************************999999998885......233444445555555444444444444444....45677889999 PP YABBY 114 pvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 p irP ekr rvPsaynrfi q d + r s + WahfP+ihfgl Vradi02g07200.1 136 P-IRPTEKRHRVPSAYNRFINKSFQ-----VSDFAGRK--SKGLRLWAHFPHIHFGL 184 8.9*****************99887.....46888887..78889**********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.4E-31 | 47 | 184 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MSGSERCCYY MDVFNVPHHT TLSPAGHCTH TLKMLHGVLW KHFSWECESF TYPIHVSVPY 60 NSLLTIVTVR CGHCANLLSV NMGASLQPFP PQDPQSQKQH ISFEEPSSKE LGSSSSKCNK 120 IAPFEAVEHE PPRIPPIRPT EKRHRVPSAY NRFINKSFQV SDFAGRKSKG LRLWAHFPHI 180 HFGLKLDGNS QGKLEQGEGG EKTNGFY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi02g07200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT090571 | 1e-115 | BT090571.1 Soybean clone JCVI-FLGm-4H4 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022634275.1 | 1e-122 | putative axial regulator YABBY 2 isoform X1 | ||||
Swissprot | Q9XFB0 | 2e-46 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A3Q0ERG4 | 1e-121 | A0A3Q0ERG4_VIGRR; putative axial regulator YABBY 2 isoform X1 | ||||
STRING | GLYMA06G46560.1 | 8e-79 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1124 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 1e-30 | YABBY family protein |
Publications ? help Back to Top | |||
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