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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi02g06990.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NF-YB | ||||||||
Protein Properties | Length: 127aa MW: 14345.3 Da PI: 4.8332 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 33 | 1.4e-10 | 5 | 92 | 6 | 88 |
NF-YB 6 rflPianvsrimkkvlP...anak..iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88 ++lP + v r++k l +++ +skd e fi ++++ a+d c++ kr+ ++++d++ al + f ++v plk+ l+ Vradi02g06990.1 5 EELPRSIVRRVVKDKLSrcsEEGEisVSKDGLLAFSESGRIFIHYLSATANDICKESKRQIVSAEDVFKALEETEFSEFVRPLKASLE 92 6789999999999988622234541156788888899999********************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.0E-24 | 3 | 93 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.0E-7 | 6 | 75 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 1.02E-18 | 7 | 92 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MAEAEELPRS IVRRVVKDKL SRCSEEGEIS VSKDGLLAFS ESGRIFIHYL SATANDICKE 60 SKRQIVSAED VFKALEETEF SEFVRPLKAS LEASTYNPDL LTSLLTSLLE SNRFQDMKWS 120 LRISYF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi02g06990.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT090451 | 3e-90 | BT090451.1 Soybean clone JCVI-FLGm-4D13 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014493538.1 | 2e-59 | DNA polymerase epsilon subunit 3 | ||||
TrEMBL | A0A1S3TID4 | 5e-58 | A0A1S3TID4_VIGRR; DNA polymerase epsilon subunit 3 | ||||
STRING | XP_007132441.1 | 4e-57 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11863 | 32 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 2e-38 | nuclear factor Y, subunit B11 |