PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g06970.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family G2-like
Protein Properties Length: 377aa    MW: 41860.4 Da    PI: 7.8979
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g06970.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.41.6e-332983155
          G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                     kprl+Wtp+LH+rF+eav+qLGG++kAtPkt+++lm++ gLtl+h+kSHLQkYRl
  Vradi02g06970.1 29 KPRLKWTPDLHARFIEAVQQLGGADKATPKTVMKLMGISGLTLYHLKSHLQKYRL 83
                     79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.5082686IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.3E-312784IPR009057Homeodomain-like
SuperFamilySSF466895.91E-162884IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-232984IPR006447Myb domain, plants
PfamPF002491.6E-93182IPR001005SANT/Myb domain
PfamPF143793.4E-22132178IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MPIPSERHMF LHTGNGSGDS SLVLSTDAKP RLKWTPDLHA RFIEAVQQLG GADKATPKTV  60
MKLMGISGLT LYHLKSHLQK YRLSKSLHGQ SNVTHKISIN PGAATDERLR ENNGTHVNNL  120
NLAPQSNNKD LHIGEALQMQ IEVQRRLNEQ LEVQRLLQLR IEAQGKYLQA VLEKAQETLG  180
RQNLGVVGLE AAKLQLSDLV SKVSSQCLNS AFLELKELQG FSTHQTQTNQ PNDCSMDSCL  240
TSCEVSQKEQ EIQNGGMSLR PFNVHTFMER KELIEGPNLN NLPSTDLKWC DPVKNTFLTP  300
LSRRSPSNLS MSIGLEGETE NGSTIRKESV KSMAEKVSQD YGLPSYFAAP KLDLTTEVKN  360
NRTSCKELDL NGFSWN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-202885158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-202885158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A5e-202985157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-202985157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-202985157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-202985157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-202885158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-202885158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-202885158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-202885158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-202885158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-202885158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g06970.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014491719.10.0myb-related protein 2
SwissprotQ9SQQ91e-124PHL9_ARATH; Myb-related protein 2
TrEMBLA0A1S3TD810.0A0A1S3TD81_VIGRR; myb-related protein 2
STRINGXP_007132437.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38523163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.31e-113G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]