PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g05780.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 897aa    MW: 98151.8 Da    PI: 5.2834
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g05780.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.45.1e-086794127
                     --S---SGGGGTS.--TTTTT-SS-SSS CS
          zf-CCCH  1 yktelCrffartG.tCkyGdrCkFaHgp 27
                     +kt+lC++++     C++Gd+C++aHg+
  Vradi02g05780.1 67 WKTSLCSYYRSHNnSCNHGDTCRYAHGE 94
                     8******777766*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.108.0E-1363100IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-76499IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.4186695IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-46694IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-66794IPR000571Zinc finger, CCCH-type
CDDcd005906.84E-6151223No hitNo description
SuperFamilySSF549281.02E-6154236IPR012677Nucleotide-binding alpha-beta plait domain
Gene3DG3DSA:3.30.70.3302.5E-6155238IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5168743.471280896IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533352.06E-47283308IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533352.06E-47340474IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533352.06E-47509634IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1502.2E-64534634IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF138474.5E-9578635IPR025714Methyltransferase domain
CDDcd024401.57E-6580634No hitNo description
PfamPF059588.5E-8780831IPR010280(Uracil-5)-methyltransferase family
Gene3DG3DSA:3.40.50.1502.2E-64780835IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533352.06E-47783836IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PROSITE patternPS012300791823IPR030390RNA methyltransferase TrmA, active site
Gene3DG3DSA:3.40.50.1502.2E-64871896IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533352.06E-47880896IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006396Biological ProcessRNA processing
GO:0000166Molecular Functionnucleotide binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 897 aa     Download sequence    Send to blast
MAEPVANTQL SPSKTLDSTN GHDSTLEPNQ MLPQDAQINQ ENDGVVSTRK RSREDDDGEE  60
RSLHPLWKTS LCSYYRSHNN SCNHGDTCRY AHGEEELRPR PDNTWDPTSE RAKKALKTET  120
GEKCSVSEDV MMTEAVVDGD DYDSNHALSK CLVHLPRKWS SENLRNFLSE QASLFGYLGI  180
AFKHAKKKKG MMIGFVTFED EEQLKSSSKD LEGKTIGNKT VKVADVIPRS FQKKSNSGVA  240
SNQELDEGDD PSSGALDAET NNDKLSVDGS VSKTRNLRDV VTPLAHITYD DQLEQKKASL  300
MQILKKLTRN ARKACPNGVS LPEWILKSRE IGGLPCKLEG IIASPIVNGY RNKCEFSVGY  360
SLEGNVTVGF MLGNFREGVT AVEEATECPN VSTIACKYAT MFQEFLQHSD LPVWNRFKNT  420
GFWRQLTVRE GRTNGNTDHA ETFGSIAEVM LIVQVSTANF DDALVASEFK RLAHAFVAGA  480
TSHCPTLPLT ALFVQDHQGI SNVAPADAPL RLLPLPKAGG DPEINENNNA MDVRIHDYIN  540
NLRFSISPTA FFQVNTLAAE KLYSLAGDWA CLGPDTLLFD ICCGTGTIGL TLAHRVGMVI  600
GIEMNASAVS DAHRNAEING IKNIRFICSK AEDVMGSLLR EYLNMTKKQD DSNTPKNGND  660
IPEDSACPEA EKGEMTSHCP ENNNAEVGSE VQNGGTSEQV DGISEQTENL TGSQLRDDGN  720
VPKEHSDDPN VCGGGNDIPG DSTCSRPETS DMTSPSEDNK AEVGSEDQKV NSSENGNTSM  780
QQFKNVVAIV DPPRAGLHPT VIKALRTHPR LRRLVYISCN PESLVANAIE LCTPSPAKIE  840
KGNKDNRGWR NMSSAGLARH RAKSMPISEA FHPVKAMAVD LFPHTPHCEL VMLLER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xj1_A1e-16536641262371Uncharacterized RNA methyltransferase SP_1029
5zq1_A1e-16536641262371Uncharacterized RNA methyltransferase SP_1029
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g05780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014494258.10.0zinc finger CCCH domain-containing protein 24
SwissprotQ8L7S30.0C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A1S3TKG20.0A0A1S3TKG2_VIGRR; zinc finger CCCH domain-containing protein 24
STRINGXP_007132247.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88541720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.10.0C3H family protein
Publications ? help Back to Top
  1. Wang Y, et al.
    Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis.
    BMC Plant Biol., 2017. 17(1): p. 261
    [PMID:29268705]