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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi02g05460.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | AP2 | ||||||||
Protein Properties | Length: 415aa MW: 45435.2 Da PI: 4.9586 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 41.5 | 3.4e-13 | 172 | 222 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g Vradi02g05460.1 172 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 222 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 11.113 | 76 | 137 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.0E-12 | 92 | 143 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.35E-9 | 101 | 138 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-11 | 102 | 138 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-8 | 172 | 222 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.28E-17 | 172 | 231 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.09E-26 | 172 | 232 | No hit | No description |
PROSITE profile | PS51032 | 15.527 | 173 | 230 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-32 | 173 | 236 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.3E-16 | 173 | 230 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-6 | 174 | 185 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-6 | 212 | 232 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 415 aa Download sequence Send to blast |
MLDLNLNAEW TDSARDGDSP VPLEEFPEGS RNQMAESGTS NSSVVNADGS SNGCCDEDSC 60 STRADDVYTF NFDILKVEGA NDVVTKELFP VSGGVATSSD CGKQVYLGGF DTAHAAARAY 120 DRAAIKFRGV DADINFNLSD YEDDLRQMKN LSKEEFVHIL RRQSTGFSRG SSKYRGVTLH 180 KCGRWEARMG QFLGKKYIYL GLFDSEVEAA RAYDKAAIKC NGREAVTNFE PSTYEGEMKS 240 AAINEVSNHN LDLNLGIATP GTGLKENWQQ LQFPSVHYNT HGGISSMMET NVDSGVGNPS 300 FKRLVVNEDC PSVWNGMCPS FFPNEEKTER MNTEHSKGLP NWAWQTHAQV NATPVPTFSA 360 AAASSGFSIS ATFPPTATFP TRSMNSNPQS LCFTSSTMHS SEYYYQVKPR QAPL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi02g05460.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031086 | 0.0 | KT031086.1 Glycine max clone HN_CCL_205 AP2-EREBP transcription factor (Glyma12g07800.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014494425.1 | 0.0 | ethylene-responsive transcription factor RAP2-7 isoform X1 | ||||
Swissprot | B8AXC3 | 6e-90 | AP21_ORYSI; APETALA2-like protein 1 | ||||
TrEMBL | A0A1S3TKZ9 | 0.0 | A0A1S3TKZ9_VIGRR; ethylene-responsive transcription factor RAP2-7 isoform X1 | ||||
STRING | XP_007132160.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2807 | 34 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 3e-93 | related to AP2.7 |