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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi02g02960.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | GATA | ||||||||
Protein Properties | Length: 356aa MW: 39585.3 Da PI: 6.6619 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.3 | 1e-18 | 272 | 305 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs+C++ kTp+WR gp g+ktLCnaCG+++++ + Vradi02g02960.1 272 CSHCQVQKTPQWRTGPLGPKTLCNACGVRFKSGR 305 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 5.7E-14 | 264 | 327 | No hit | No description |
SMART | SM00401 | 2.1E-14 | 266 | 320 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.4E-14 | 270 | 303 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 11.174 | 270 | 302 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 4.88E-14 | 271 | 328 | No hit | No description |
Pfam | PF00320 | 1.9E-16 | 272 | 305 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 272 | 297 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MSRSECTKTK TKTKRDKDKP IPQTPVSLNQ RKLHCTFLPL SFFSKQEPEK MEVAAAEALK 60 PSLRTEFIFP QAICDEIFCF NANNIVVGED FSVDDLLDFS NGEFQLGKDF DVYEEEEDEE 120 KDSTSGSSQE RSEDDSNSNS TGAGGVGDSD SVFAGELSVP ADDVADLEWV SHFVDDSLPE 180 LSLLYPVPSE QTRVWAEPKP RPGRAQNGST IPRRPRTGKN RKPNARVWSF TVSPPSLCFS 240 VLAGSVEFGE PTAKKQKKKA EAQIGAQFQR RCSHCQVQKT PQWRTGPLGP KTLCNACGVR 300 FKSGRLFPEY RPACSPTFSG DIHSNSHRKV LEMRRRKEIS EPQTGSDRPQ LVPSF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi02g02960.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014492524.1 | 0.0 | GATA transcription factor 7 | ||||
Refseq | XP_014492528.1 | 0.0 | GATA transcription factor 7 | ||||
Refseq | XP_022633750.1 | 0.0 | GATA transcription factor 7 | ||||
TrEMBL | A0A1S3TFH7 | 0.0 | A0A1S3TFH7_VIGRR; GATA transcription factor | ||||
STRING | XP_007131760.1 | 1e-169 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1108 | 34 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36240.1 | 2e-50 | GATA transcription factor 7 |