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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi02g01570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | E2F/DP | ||||||||
Protein Properties | Length: 289aa MW: 32176.9 Da PI: 5.4636 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 88.1 | 6.2e-28 | 70 | 152 | 2 | 71 |
E2F_TDP 2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 ++++Lr++++k ++ek+e+ g++t+neva+eLv+e d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg Vradi02g01570.1 70 SGRGLRQFSMK---VCEKVENrGRTTYNEVADELVAEfsdptnseltpdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 152 689********...******99*******************************************************.*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 5.6E-46 | 65 | 158 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 9.9E-34 | 69 | 152 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 4.3E-25 | 71 | 152 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.86E-21 | 72 | 153 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
CDD | cd14458 | 3.55E-22 | 157 | 227 | IPR014889 | Transcription factor DP, C-terminal |
SMART | SM01138 | 8.1E-36 | 159 | 286 | IPR014889 | Transcription factor DP, C-terminal |
SuperFamily | SSF144074 | 1.33E-23 | 159 | 240 | No hit | No description |
Pfam | PF08781 | 4.9E-16 | 188 | 240 | IPR014889 | Transcription factor DP, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MGDEDDDEVL GCATTASGQS ASTNSLPPPA DNTLLKLNHL DLHADDAGSQ ASLAGKKKKR 60 GQRAVGPDKS GRGLRQFSMK VCEKVENRGR TTYNEVADEL VAEFSDPTNS ELTPDQQQYD 120 EKNIRRRVYD ALNVLMAMDI ISKDKKEIQW KGLPRTSVND IEEIKTERLG LRNRIEKKTA 180 YLQELEEQTR PHATVEVEIS EDMQLVHFDF NSTPFELHDD NYVLKAMKFC ERPQQDNTTH 240 NFTVGGEGSS MSGLCQPQGP STNLKVSNRP PTSPPLPGIL KARVKQEH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_B | 2e-38 | 63 | 157 | 1 | 93 | PROTEIN (TRANSCRIPTION FACTOR DP-2) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi02g01570.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT094212 | 0.0 | BT094212.1 Soybean clone JCVI-FLGm-18G24 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007131528.1 | 0.0 | hypothetical protein PHAVU_011G020500g | ||||
Refseq | XP_014523149.1 | 0.0 | transcription factor-like protein DPB | ||||
Swissprot | Q9FNY2 | 1e-117 | DPB_ARATH; Transcription factor-like protein DPB | ||||
TrEMBL | A0A1S3VYI6 | 0.0 | A0A1S3VYI6_VIGRR; transcription factor-like protein DPB | ||||
TrEMBL | V7AD90 | 0.0 | V7AD90_PHAVU; Uncharacterized protein | ||||
STRING | XP_007131528.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3321 | 33 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03415.1 | 1e-119 | Transcription factor DP |