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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi02g01360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | GRF | ||||||||
Protein Properties | Length: 393aa MW: 43830.7 Da PI: 6.4316 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.1 | 8.6e-25 | 140 | 184 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+ Vradi02g01360.1 140 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVES 184 79****************************************986 PP | |||||||
2 | QLQ | 61.5 | 2.2e-21 | 20 | 56 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s+FT +Q+++L++Q+l++Ky++a++PvP++L+++iqk Vradi02g01360.1 20 SPFTVSQWEELEHQALIFKYMLAGLPVPQNLVLPIQK 56 89*********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.5E-12 | 20 | 56 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.13 | 21 | 56 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.5E-15 | 21 | 55 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.762 | 140 | 184 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.7E-21 | 141 | 183 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MNNSGGGTMM GLSNGYYGRS PFTVSQWEEL EHQALIFKYM LAGLPVPQNL VLPIQKSFNS 60 IPHAFFHHPT CQFSNPVSFL SGDFEPISYV KCVQKLPFLS FLLPNECPLS QGCVWNVGNE 120 KLCMTNITVS YCSFYGKKVD PEPGRCRRTD GKKWRCSKEA YPDSKYCERH MHRGRNRSRK 180 PVESQTMTQS SSTVTTLDVT GGSGSSRTVN FQNLPANAVG NLQSTDSVTD HTSYHLDSIP 240 YAIPSKEYRY LQGLKSEGGE HIFFSEASGS SKVLQMESQQ LEDTWSLMSN NVASFSTSKS 300 SNDSLLHSDY PQNSFLSGEY ASEENLKEEG QSLRPFFNEW PKGRDSWSCL EDERSNQAAF 360 STTQLSISIP MSSDISATSS QSPHGENEIQ FR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi02g01360.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014523171.1 | 0.0 | growth-regulating factor 1 | ||||
TrEMBL | A0A1S3VXS3 | 0.0 | A0A1S3VXS3_VIGRR; growth-regulating factor 1 | ||||
STRING | GLYMA11G11826.1 | 1e-180 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4781 | 29 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 3e-40 | growth-regulating factor 5 |