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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0273s00180.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | SBP | ||||||||
Protein Properties | Length: 980aa MW: 108078 Da PI: 5.6998 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 73.5 | 3.7e-23 | 155 | 203 | 1 | 49 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSE CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrf 49 +Cqve+C+adls+ak+yhrrhkvCe+hska+ +lv + +qrfCqqCsr Vradi0273s00180.1 155 VCQVEDCSADLSKAKDYHRRHKVCEMHSKASRALVGNAMQRFCQQCSRL 203 6**********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.0E-23 | 149 | 203 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 17.187 | 153 | 228 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.18E-21 | 154 | 204 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.7E-16 | 156 | 203 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF48403 | 5.44E-8 | 747 | 865 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 1.0E-6 | 751 | 867 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 2.84E-7 | 753 | 864 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 980 aa Download sequence Send to blast |
MEARFGAEAY HFFGVGASSD LRGMGKRSSE WDLNDWRWDG DLFIASRLNP VPVDGVGVGQ 60 QFFPLGSGIP VVGGPSNSSS CSEEVDPRDP KGNKEGDKKR RVIVLEDDGL NEEAGTLSLK 120 LGGHASGVVD REVASWDGMN GKKSRVSGST SNRAVCQVED CSADLSKAKD YHRRHKVCEM 180 HSKASRALVG NAMQRFCQQC SRLPVALADA LEGCPKALLF LLVTTSTFTD RSNQTTDQDL 240 LTHILRSLAS QNGEQAGKNI SNLLQEPENL LREGGSSRKS EMVSTLFSNG SQGSPTVTRQ 300 HEAVSMAKLQ QQVTHAHDAR ASDQQITSSI KPSMSNSPPA YSEARDSTAG QIKMNNFDLN 360 DIYIDSDDGM EDLERLPVST NLVTSSLDYP WAQQDSHQSS PPQTSGNSDS ASAQSPSSSS 420 GEAQSRTDRI VFKLFGKEPN DFPLVLRAQI LDWLSHSPTD MESYIRPGCI VLTIYLRQAE 480 ALWEELCYDL TSSLNRLLDV ADDTFWRNGW VHIRAQHQMA FIFNGQVLID TSLPFRSNNY 540 SKILTVSPIA VPASERAQFS VKGVNLIRPA TRLMCALEGK YLVCEDTQMS MDQCSNEPDE 600 LQCVQFSCSV PVMNGRGFIE IEDQGLSSSF FPFIVVEEDV CSEICTLEPL LEISETDPDI 660 EGTGKVKAKN QAMDFIHEMG WLLHRSRLKL RMVHLNSTVD PFQLKRFKWL IEFSMDHDWC 720 AAVKKLLNLL FDGTVNAGDH PSLYLALSDM GLLHKAVRRN SKQLVELLLR YVPENISDEL 780 GPEVKALVDG ENKTFLFRPD VVGPAGLTPL HIAAGKDGSE DVLDALTNDP CMVGIEAWKN 840 ARDSTGSTPE DYARLRGHYA YIHLVQKKIN KRHGAAHVVV EIPNNTTESN TNQKQNETST 900 SFEIGKPAVR LSQGHCKLCD SKISCRTAVG RSLVYRPAML SMVAIAAVCV CVALLFKSSP 960 EVICMFRPFR WETLDFGTS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj0_A | 5e-22 | 156 | 205 | 6 | 55 | squamosa promoter-binding protein-like 12 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00633 | PBM | Transfer from PK06791.1 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0273s00180.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014492405.1 | 0.0 | squamosa promoter-binding-like protein 1 | ||||
Refseq | XP_014492406.1 | 0.0 | squamosa promoter-binding-like protein 1 | ||||
Refseq | XP_022633791.1 | 0.0 | squamosa promoter-binding-like protein 1 | ||||
Swissprot | Q9SMX9 | 0.0 | SPL1_ARATH; Squamosa promoter-binding-like protein 1 | ||||
TrEMBL | A0A0L9TY71 | 0.0 | A0A0L9TY71_PHAAN; Uncharacterized protein | ||||
STRING | XP_007145109.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1539 | 34 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47070.1 | 0.0 | squamosa promoter binding protein-like 1 |
Publications ? help Back to Top | |||
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