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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0267s00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | VOZ | ||||||||
Protein Properties | Length: 493aa MW: 55164.5 Da PI: 5.5847 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 412.9 | 5.8e-127 | 239 | 465 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwna 92 pppsafl+pkcalwdc+rpaqg+ew+++ycss+h+ la neglpg+tp+lrp+gi++kdg+lfaa+ ak+qgkevgip+cegaa++kspwna Vradi0267s00010.1 239 PPPSAFLAPKCALWDCFRPAQGVEWCRNYCSSCHELLANNEGLPGMTPILRPGGIGVKDGPLFAAVLAKTQGKEVGIPSCEGAASTKSPWNA 330 89*****************************************************************************************9 PP VOZ 93 a..........elfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyei 174 + e+fdls+lege++rewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmke+gg+krsyymdpqp+s++ewhlyeyei Vradi0267s00010.1 331 PglkcylfsgaEFFDLSFLEGEAVREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMKEHGGQKRSYYMDPQPLSYLEWHLYEYEI 422 6555555555589******************************************************************************* PP VOZ 175 neldalalyrlelklvdekksakgkvskdsladlqkklgrlta 217 n+ d +alyrlelklv++kks+kgkv+k+sl+dlq+k+g+lta Vradi0267s00010.1 423 NNHDGCALYRLELKLVEKKKSPKGKVTKESLNDLQNKMGQLTA 465 *****************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 493 aa Download sequence Send to blast |
MMRESSKGKF GSSSIQSMKE KEKHLVDKIQ GIFXNLQCAR KEGRGSDIVI FEEQMHQLLR 60 EWKAELESPA TSLADGSFDS FTSELALLLQ VIEEKDDATS PLTKPGPLKT ELQTSNISDN 120 NFQFFQEKHF DDNQPLGHNF EGSASTLYNN AFNNSVMEQL DFHPFSLNQD MNHNHVGHNS 180 DLIGQVDLYQ DLGHNTEIKH SEPNQFSIEG FDCSQFFGAE DTVHHGENII PNILPNICPP 240 PSAFLAPKCA LWDCFRPAQG VEWCRNYCSS CHELLANNEG LPGMTPILRP GGIGVKDGPL 300 FAAVLAKTQG KEVGIPSCEG AASTKSPWNA PGLKCYLFSG AEFFDLSFLE GEAVREWLFF 360 DKPRRAFESG NRKQRSLPDY SGRGWHESRK QVMKEHGGQK RSYYMDPQPL SYLEWHLYEY 420 EINNHDGCAL YRLELKLVEK KKSPKGKVTK ESLNDLQNKM GQLTAAVLSS DDGIPIKGKT 480 NAKSENDGSP EN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0267s00010.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014492703.1 | 0.0 | transcription factor VOZ1-like | ||||
Refseq | XP_014492704.1 | 0.0 | transcription factor VOZ1-like | ||||
Swissprot | Q9SGQ0 | 1e-150 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A1S3TG04 | 0.0 | A0A1S3TG04_VIGRR; transcription factor VOZ1-like | ||||
STRING | GLYMA06G43890.3 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1498 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 1e-142 | vascular plant one zinc finger protein |
Publications ? help Back to Top | |||
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