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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0265s00040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | AP2 | ||||||||
Protein Properties | Length: 423aa MW: 46246.2 Da PI: 5.2857 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 26.8 | 1.3e-08 | 262 | 295 | 2 | 38 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgt 38 y+GV++++++grW A+I + +k +lg+fg Vradi0265s00040.1 262 AYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFGK 295 69***************988532...5********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 12.326 | 149 | 226 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-4 | 160 | 232 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.04E-9 | 195 | 228 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 8.52E-12 | 196 | 228 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.1E-9 | 196 | 227 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-6 | 261 | 303 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.7E-4 | 262 | 299 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-4 | 262 | 299 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.2E-8 | 262 | 310 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 9.769 | 262 | 332 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence Send to blast |
MAGATNWLTF SLTPMEMLRS PDSSSHCMLD NFYATNEWTN SKGLMDSESE NQPLLVPKAE 60 DFFENQTETQ QDDSSLTQIY DHGSASVYFG DQQDLNAIPG FQAFSGTNSS SELDDSVSDK 120 TTRVAPADLG AHSGESSKGA LSLCDAAAHD KAIIAVEFAT PKKWWFGRDA SKYERPSLIL 180 SLALTFAFAF NSPGKLGGYD KEEKAARAYD LAAIKYWGPT ATTNFPISNY TKELEEMKHT 240 GKQEFIASLR RKSSGFSRGA SAYRGVTRHH QQGRWQARIG RVAGNKDLYL GTFGKGASAV 300 TNFEMSRYDV ENILNSSLPV GGVAKRLKLS SPESEKKVSV TDEQPEGTNE SSTINFSAIQ 360 PVASIPYDSA NAYPQNLFHQ FHHSNSGSSS VQKSDAIDCM LGFQDIVLYM LSFGTDKTIT 420 EM* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0265s00040.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014492748.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL6 | ||||
Refseq | XP_022633887.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL6 | ||||
Swissprot | Q52QU2 | 1e-93 | AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6 | ||||
TrEMBL | A0A1S3TG47 | 0.0 | A0A1S3TG47_VIGRR; AP2-like ethylene-responsive transcription factor AIL6 | ||||
STRING | XP_007156467.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4810 | 31 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10510.2 | 6e-96 | AINTEGUMENTA-like 6 |
Publications ? help Back to Top | |||
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