PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0259s00080.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family FAR1
Protein Properties Length: 292aa    MW: 32235.9 Da    PI: 5.9968
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0259s00080.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR184.51.7e-26156245190
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                        kfY +YA++vGF vr+ + ++s  +g++  r++ C+k+g++ ++k +   e+++r++ r gCka++ vk+ek+gkw+vt++ ++HnH+l 
  Vradi0259s00080.1 156 KFYVDYARRVGFVVRIMQRRRSGIDGRTLARRLGCNKQGFSPNTKGAFGPEKKPRPSAREGCKATILVKLEKSGKWVVTRFIKDHNHPLI 245
                        6**********************************************9****************************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd003033.16E-15374No hitNo description
SuperFamilySSF506301.31E-5468IPR021109Aspartic peptidase domain
PfamPF136505.6E-9562No hitNo description
PROSITE patternPS0014101425IPR001969Aspartic peptidase, active site
PfamPF031011.7E-24156245IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006508Biological Processproteolysis
GO:0004190Molecular Functionaspartic-type endopeptidase activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MKLQGWVKGK KILVLIDSGA SHNFISTRLV EELGLKVEET PPYKVCLGDG QKKTTQGCCD  60
DILLNLEGVE IELEGGIEGM EQLTHQDASG DPSPLLDSNL MDHGGQTFMD FVVVDSDKAN  120
ETERSCLEES TSIFKGVEIQ EPYVGMEFDS EVAARKFYVD YARRVGFVVR IMQRRRSGID  180
GRTLARRLGC NKQGFSPNTK GAFGPEKKPR PSAREGCKAT ILVKLEKSGK WVVTRFIKDH  240
NHPLIATANG FGTVDNFSRR SIMEILPIVL DMSEMILADH LLKGVASDLT E*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0259s00080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022634028.11e-127protein FAR1-RELATED SEQUENCE 5-like isoform X3
TrEMBLA0A3Q0EQA41e-126A0A3Q0EQA4_VIGRR; protein FAR1-RELATED SEQUENCE 5-like isoform X3
STRINGXP_007140743.12e-98(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF96531104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12850.21e-49FAR1 family protein