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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0259s00080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | FAR1 | ||||||||
Protein Properties | Length: 292aa MW: 32235.9 Da PI: 5.9968 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 84.5 | 1.7e-26 | 156 | 245 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfY +YA++vGF vr+ + ++s +g++ r++ C+k+g++ ++k + e+++r++ r gCka++ vk+ek+gkw+vt++ ++HnH+l Vradi0259s00080.1 156 KFYVDYARRVGFVVRIMQRRRSGIDGRTLARRLGCNKQGFSPNTKGAFGPEKKPRPSAREGCKATILVKLEKSGKWVVTRFIKDHNHPLI 245 6**********************************************9****************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00303 | 3.16E-15 | 3 | 74 | No hit | No description |
SuperFamily | SSF50630 | 1.31E-5 | 4 | 68 | IPR021109 | Aspartic peptidase domain |
Pfam | PF13650 | 5.6E-9 | 5 | 62 | No hit | No description |
PROSITE pattern | PS00141 | 0 | 14 | 25 | IPR001969 | Aspartic peptidase, active site |
Pfam | PF03101 | 1.7E-24 | 156 | 245 | IPR004330 | FAR1 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006508 | Biological Process | proteolysis | ||||
GO:0004190 | Molecular Function | aspartic-type endopeptidase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MKLQGWVKGK KILVLIDSGA SHNFISTRLV EELGLKVEET PPYKVCLGDG QKKTTQGCCD 60 DILLNLEGVE IELEGGIEGM EQLTHQDASG DPSPLLDSNL MDHGGQTFMD FVVVDSDKAN 120 ETERSCLEES TSIFKGVEIQ EPYVGMEFDS EVAARKFYVD YARRVGFVVR IMQRRRSGID 180 GRTLARRLGC NKQGFSPNTK GAFGPEKKPR PSAREGCKAT ILVKLEKSGK WVVTRFIKDH 240 NHPLIATANG FGTVDNFSRR SIMEILPIVL DMSEMILADH LLKGVASDLT E* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0259s00080.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022634028.1 | 1e-127 | protein FAR1-RELATED SEQUENCE 5-like isoform X3 | ||||
TrEMBL | A0A3Q0EQA4 | 1e-126 | A0A3Q0EQA4_VIGRR; protein FAR1-RELATED SEQUENCE 5-like isoform X3 | ||||
STRING | XP_007140743.1 | 2e-98 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF965 | 31 | 104 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12850.2 | 1e-49 | FAR1 family protein |