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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0234s00240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | YABBY | ||||||||
Protein Properties | Length: 77aa MW: 8291.8 Da PI: 7.2064 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 86.3 | 8.7e-27 | 6 | 64 | 5 | 63 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshl 63 ++e+vCyv+CnfCnt lavsvP +s++++vtvrCGhC++llsvn+ + q ++++ Vradi0234s00240.1 6 MATERVCYVHCNFCNTTLAVSVPCSSMLTIVTVRCGHCANLLSVNMGASLQPFPSQETQ 64 679**********************************************9999999864 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.0E-27 | 7 | 64 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 77 aa Download sequence Send to blast |
MSMDMMATER VCYVHCNFCN TTLAVSVPCS SMLTIVTVRC GHCANLLSVN MGASLQPFPS 60 QETQQGTGII FKMQII* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0234s00240.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT095127 | 2e-84 | BT095127.1 Soybean clone JCVI-FLGm-6F4 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014490394.1 | 1e-40 | putative axial regulator YABBY 2 | ||||
Refseq | XP_017424140.1 | 1e-40 | PREDICTED: putative axial regulator YABBY 2 isoform X1 | ||||
Refseq | XP_017424142.1 | 9e-41 | PREDICTED: putative axial regulator YABBY 2 isoform X3 | ||||
Swissprot | Q8GW46 | 5e-22 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A0L9UND0 | 1e-39 | A0A0L9UND0_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SH30 | 3e-39 | A0A0S3SH30_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A1S3T9G6 | 2e-39 | A0A1S3T9G6_VIGRR; putative axial regulator YABBY 2 | ||||
STRING | XP_007150001.1 | 4e-39 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1124 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 2e-24 | YABBY family protein |
Publications ? help Back to Top | |||
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