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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0228s00080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | SBP | ||||||||
Protein Properties | Length: 481aa MW: 53908.9 Da PI: 6.947 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 134.3 | 3.9e-42 | 178 | 254 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv gC++dls+ k+yh+rhkvC++hsk+++v+v+gleqrfCqqCsrfh l efD++krsCrrrLa+hnerrrk+q Vradi0228s00080.1 178 VCQVYGCNMDLSSSKDYHKRHKVCDAHSKTAKVIVNGLEQRFCQQCSRFHLLAEFDDGKRSCRRRLAGHNERRRKPQ 254 6**************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.7E-34 | 173 | 240 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.795 | 176 | 253 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 6.54E-40 | 177 | 258 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 7.5E-32 | 179 | 252 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 481 aa Download sequence Send to blast |
MESWSYVPEE KGYLFSDEMD FSLDAFMRSR RTLVEWDNKS NFERDGFNSD REVVKSMEFV 60 DLGFPDLLQK SSHVSQPLET SSYDLDSNSS RRGNSSTQVI ALDSTMGEEE SDSKHLSSLV 120 EAKTHDSSLI DLKLGRLADC KGTSSDKVAK EGFTLTSINP TTLSKRARTS SLSAQAPVCQ 180 VYGCNMDLSS SKDYHKRHKV CDAHSKTAKV IVNGLEQRFC QQCSRFHLLA EFDDGKRSCR 240 RRLAGHNERR RKPQFDYMTG KQHKILQSYQ GTKYLGSSLQ NKPQFPFQNI FQSGILFHGK 300 HAQNSQSGRI KLEEDSLYSS QLAAPVTLGQ ELSSCALSLL SDQSQYPSRH AAGNPLAGSR 360 ILHGIHIQDR DDLVSETSLR ITSSADKYAA NESFPCNTAS KDVIKNQTAP FSNAVHALQD 420 HHGDDICQPS DLFDIKHRLS SEHGATVDLF QLSSHLQRVE QQRNSVLVKW ENEDYCFPTV 480 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-29 | 170 | 252 | 2 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0228s00080.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014490704.1 | 0.0 | squamosa promoter-binding-like protein 6 | ||||
Refseq | XP_014490705.1 | 0.0 | squamosa promoter-binding-like protein 6 | ||||
Refseq | XP_014490706.1 | 0.0 | squamosa promoter-binding-like protein 6 | ||||
Refseq | XP_014490707.1 | 0.0 | squamosa promoter-binding-like protein 6 | ||||
Refseq | XP_022633224.1 | 0.0 | squamosa promoter-binding-like protein 6 | ||||
Refseq | XP_022633225.1 | 0.0 | squamosa promoter-binding-like protein 6 | ||||
Refseq | XP_022633226.1 | 0.0 | squamosa promoter-binding-like protein 6 | ||||
TrEMBL | A0A1S3TAB9 | 0.0 | A0A1S3TAB9_VIGRR; squamosa promoter-binding-like protein 6 | ||||
STRING | XP_007153485.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1819 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 4e-66 | SBP family protein |