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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0206s00170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | YABBY | ||||||||
Protein Properties | Length: 178aa MW: 19800.7 Da PI: 9.4587 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 40.2 | 1.2e-12 | 16 | 58 | 24 | 62 |
YABBY 24 vsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaesh 62 vsvP +sl++v tvrCGhCtsllsvn++k+s +lla+ s Vradi0206s00170.1 16 VSVPCSSLSTVATVRCGHCTSLLSVNMNKTSffpfHLLASLSP 58 9***************************998677677777665 PP | |||||||
2 | YABBY | 108.6 | 1.2e-33 | 80 | 143 | 103 | 165 |
YABBY 103 enedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPk 165 + e+e++p++ v++PPekrqr Psaynrfikeei+r+ka+nP+++hreafs+aaknWa fP+ Vradi0206s00170.1 80 DCEEEKTPQTSSvVNKPPEKRQRTPSAYNRFIKEEIKRLKAENPKMAHREAFSTAAKNWANFPP 143 34455666665559*************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 4.1E-48 | 15 | 143 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.23E-9 | 87 | 144 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 4.6E-6 | 94 | 144 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MLRRMWILYH NINGNVSVPC SSLSTVATVR CGHCTSLLSV NMNKTSFFPF HLLASLSPVE 60 PKGADKPLKK YSSSIVTYYD CEEEKTPQTS SVVNKPPEKR QRTPSAYNRF IKEEIKRLKA 120 ENPKMAHREA FSTAAKNWAN FPPSNCKGEA DSCKILHLES PNASQCGMGV SIYPTEK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0206s00170.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-56 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022632838.1 | 1e-106 | axial regulator YABBY 4-like | ||||
Swissprot | Q9LDT3 | 1e-42 | YAB4_ARATH; Axial regulator YABBY 4 | ||||
TrEMBL | A0A3Q0ELR4 | 1e-104 | A0A3Q0ELR4_VIGRR; axial regulator YABBY 4-like | ||||
STRING | XP_007153748.1 | 3e-77 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6144 | 28 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 6e-45 | YABBY family protein |
Publications ? help Back to Top | |||
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