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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi01g14740.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 671aa MW: 74042.2 Da PI: 5.8935 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.2 | 3.3e-09 | 55 | 86 | 26 | 56 |
-HHHHHHH.HHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 26 saeereeL.AkklgLterqVkvWFqNrRakek 56 + +++++L Ak+lgL+ +qVk+WFqNrR+++k Vradi01g14740.1 55 TPQQIQDLeAKRLGLENKQVKFWFQNRRTQMK 86 567888887999*****************999 PP | |||||||
2 | START | 27.6 | 6.2e-10 | 243 | 325 | 2 | 76 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT- CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetl 76 +a a++elvk+a + p+W kss e +n de+ + f++ v + +ea ra+gvv + + lve+++d+ +W+e++ Vradi01g14740.1 243 IAINAMDELVKMARQDNPLWIKSSdgrnEVLNCDEYARMFPTF-VgtkpagYLIEATRATGVVLASSLGLVETFMDVD-RWQEMF 325 57789*******************999999999****999774.25999*****************************.****98 PP | |||||||
3 | START | 85.6 | 1.1e-27 | 326 | 417 | 115 | 206 |
EEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 115 irqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ++ + +g+wv+vdvS+d ++ ++s++++ +++lpSg++i++++ng sk+twveh ++++++h+l r+lv+sg+ +ga++w a l rqce+ Vradi01g14740.1 326 CKHHAEGVWVVVDVSIDIMRNASNSHPSMSCRRLPSGCVIQDMPNGLSKITWVEHSQYDESVIHQLCRPLVSSGIGFGAQRWIASLLRQCEC 417 8999**************************************************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.55E-10 | 30 | 88 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 0.008 | 47 | 92 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.04E-8 | 48 | 88 | No hit | No description |
Pfam | PF00046 | 1.3E-6 | 55 | 86 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 10.754 | 64 | 88 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-7 | 64 | 95 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50848 | 20.977 | 233 | 420 | IPR002913 | START domain |
CDD | cd08875 | 3.82E-77 | 237 | 416 | No hit | No description |
SuperFamily | SSF55961 | 5.08E-17 | 242 | 417 | No hit | No description |
SMART | SM00234 | 0.0037 | 242 | 417 | IPR002913 | START domain |
Pfam | PF01852 | 1.5E-4 | 243 | 325 | IPR002913 | START domain |
Pfam | PF01852 | 2.5E-22 | 326 | 417 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.75E-13 | 439 | 634 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 671 aa Download sequence Send to blast |
MMGESFDTSN LLGRIRDDDY ESRSESDNFD GGSGDEQDVG DDQPQRKKKK YHRHTPQQIQ 60 DLEAKRLGLE NKQVKFWFQN RRTQMKTQLE RHENMVLKQE NDKLRAENGV MKEALANPIC 120 NNCGGPAIPG QISLEEHQTR IENARLKDEL NRICTLANKF LGRSLSPMAS PMSLPPTNSG 180 LELAIGRNGM GGSSNFGMPV PIGFDLGDGA LGSSPAMASM AARAPLGMMG NEIHLERSML 240 IDIAINAMDE LVKMARQDNP LWIKSSDGRN EVLNCDEYAR MFPTFVGTKP AGYLIEATRA 300 TGVVLASSLG LVETFMDVDR WQEMFCKHHA EGVWVVVDVS IDIMRNASNS HPSMSCRRLP 360 SGCVIQDMPN GLSKITWVEH SQYDESVIHQ LCRPLVSSGI GFGAQRWIAS LLRQCECLAI 420 LMTPPGPSDD PTVLSQSNRR SVLKLAQRMN EYFCSGICAS SARKWDVVHI GNLADDMKIM 480 ARKIVDDPNE APGYVLSAST CVWLPVPRQR VFDFLRNEQL RGEWDMLSKG GPMKEMLHVP 540 KGQEHGNCVS ILHYANNEGN VLYLQESWTD ASGSMVVYSP INMQSLNMMM MNTGDSSFVS 600 LRPSGFAILP DGHSNNSDNN DGGGSCLLTV GLQMVQNDNP SAKFTLESVQ TVNSLLSCTI 660 QKVKEALGVS * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi01g14740.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014502466.1 | 0.0 | homeobox-leucine zipper protein ANTHOCYANINLESS 2-like | ||||
Swissprot | Q0WV12 | 0.0 | ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||
TrEMBL | A0A1S3U8X1 | 0.0 | A0A1S3U8X1_VIGRR; homeobox-leucine zipper protein ANTHOCYANINLESS 2-like | ||||
STRING | XP_007152327.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1192 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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