PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi01g14220.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Nin-like

Protein Properties

Length: 1003aa MW: 111677 Da PI: 6.1659

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi01g14220.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.1	4.2e-29	592	643	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl++l++yF +++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rkik++ Vradi01g14220.1 592 AEKSISLDVLQHYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKV 643 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.245	580	663	IPR003035	RWP-RK domain
Pfam	PF02042	4.7E-25	596	643	IPR003035	RWP-RK domain
Gene3D	G3DSA:3.10.20.240	2.9E-27	902	983	No hit	No description
SMART	SM00666	3.1E-25	902	984	IPR000270	PB1 domain
PROSITE profile	PS51745	23.964	902	984	IPR000270	PB1 domain
SuperFamily	SSF54277	1.57E-22	902	987	No hit	No description
CDD	cd06407	3.02E-36	903	983	No hit	No description
Pfam	PF00564	3.8E-19	903	983	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1003 aa Download sequence Send to blast
MSESKEENPD FLPKSKPQEE HGFAMDFDIG LESLWPLDHI SSVSNPMSPF LLSTIEQPFS 60 PVWAFSDVED EKQIRIAIAG NTKAVTENPV ENYDNKKYVS PSLVAVPPSE NSDGYCLIKE 120 RMTQALRHFK ELTEQNVLAQ VWAPVRNGNR YALTTSGQPF VLDPHSNGLH QYRTVSLRYM 180 FSVDGENDEI LGLPGRVFQQ KIPEWTPNVQ YYSSKEYQRL NHAQHYNVRG TLALPVFEPA 240 GQSCVAVLEL IMTSPKINYA PEVDKICKAL ECHNVPLVRS SDPVVFSLQA VNLRSSEILE 300 HPYNQICNED RQHALAEILE ILTIVCETHS LPLAQTWVPC KHRSVLAHGG GHKKSCSSFD 360 GCCMGQVCMS ITEVAFYVID AHTWGFHEAC VEHHLQQGQG VAGRAFLSHN MCFCGNITQF 420 CKTEYPLVHY ALMFGLTSSF AVCLQSSHTG NDEYVIEFFL PPRITEFNEQ KTLLRSILAT 480 MKPHFQSLKI AAGVELEQNC SIEIIEARKE RVHLWFESIP ITQSSMSPPR HASPNMGERL 540 PLEPSEQQTT TDFDDINDGR NLGDNTDGHI DQNTSLEPRT KKKPSERKRG KAEKSISLDV 600 LQHYFTGSLK DAAKSLGVCP TTMKRICRQH GISRWPSRKI KKVNRSLSKL KCVIESVHGA 660 EGAFGLNSLS TGSLPIAAGS FSEPSTSNKF NRQTSLTIRP SEPKINEQDF DASRASETNR 720 QAGLEGQFLS TRTQNPEKVI NEKVVAIQEI GTKGTTRFRT GSGSSEESAN PSPHGSCQGS 780 PPNEMSPPKD IFVTGISEQC LVLRGSLGST LHSTSIPNHA TAYPIPNFVE TTEPQEPFGG 840 QLLEGVGSSK DLRNLCPSTD AVLEDQVPEP YRMNPQCSDL APVQHRDTNN MTPFAVRKEV 900 KNVTIKATYR EDIIRFKISL NCVIVELKEE IAKRLKLEEG TFDIKYLDDD HEWVLIACDA 960 DLQECMDISR SSGSNIIRLV VHDILPILGS SCESSGDWKC CI*

Sequence ? help Back to Top

Protein Sequence Length: 1003 aa Download sequence Send to blast

MSESKEENPD FLPKSKPQEE HGFAMDFDIG LESLWPLDHI SSVSNPMSPF LLSTIEQPFS  60
PVWAFSDVED EKQIRIAIAG NTKAVTENPV ENYDNKKYVS PSLVAVPPSE NSDGYCLIKE  120
RMTQALRHFK ELTEQNVLAQ VWAPVRNGNR YALTTSGQPF VLDPHSNGLH QYRTVSLRYM  180
FSVDGENDEI LGLPGRVFQQ KIPEWTPNVQ YYSSKEYQRL NHAQHYNVRG TLALPVFEPA  240
GQSCVAVLEL IMTSPKINYA PEVDKICKAL ECHNVPLVRS SDPVVFSLQA VNLRSSEILE  300
HPYNQICNED RQHALAEILE ILTIVCETHS LPLAQTWVPC KHRSVLAHGG GHKKSCSSFD  360
GCCMGQVCMS ITEVAFYVID AHTWGFHEAC VEHHLQQGQG VAGRAFLSHN MCFCGNITQF  420
CKTEYPLVHY ALMFGLTSSF AVCLQSSHTG NDEYVIEFFL PPRITEFNEQ KTLLRSILAT  480
MKPHFQSLKI AAGVELEQNC SIEIIEARKE RVHLWFESIP ITQSSMSPPR HASPNMGERL  540
PLEPSEQQTT TDFDDINDGR NLGDNTDGHI DQNTSLEPRT KKKPSERKRG KAEKSISLDV  600
LQHYFTGSLK DAAKSLGVCP TTMKRICRQH GISRWPSRKI KKVNRSLSKL KCVIESVHGA  660
EGAFGLNSLS TGSLPIAAGS FSEPSTSNKF NRQTSLTIRP SEPKINEQDF DASRASETNR  720
QAGLEGQFLS TRTQNPEKVI NEKVVAIQEI GTKGTTRFRT GSGSSEESAN PSPHGSCQGS  780
PPNEMSPPKD IFVTGISEQC LVLRGSLGST LHSTSIPNHA TAYPIPNFVE TTEPQEPFGG  840
QLLEGVGSSK DLRNLCPSTD AVLEDQVPEP YRMNPQCSDL APVQHRDTNN MTPFAVRKEV  900
KNVTIKATYR EDIIRFKISL NCVIVELKEE IAKRLKLEEG TFDIKYLDDD HEWVLIACDA  960
DLQECMDISR SSGSNIIRLV VHDILPILGS SCESSGDWKC CI*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi01g14220.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	0.0	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014518132.1	0.0	protein NLP6
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A1S3VIU3	0.0	A0A1S3VIU3_VIGRR; protein NLP6
STRING	XP_007152252.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4257	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]