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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi01g12780.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | G2-like | ||||||||
Protein Properties | Length: 378aa MW: 42320.5 Da PI: 9.635 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 106.9 | 1.2e-33 | 81 | 135 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl Vradi01g12780.1 81 KPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 135 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.801 | 78 | 138 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-32 | 78 | 136 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.97E-16 | 80 | 136 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-23 | 81 | 136 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.8E-8 | 83 | 133 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.8E-21 | 186 | 224 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
RGVYAAAIAK GFHIFISSSI KTHHIHRICS SISLYSSQFS SLIREIMDRM FPPKKPSTMN 60 SHDRPMCVQG DSGLVLTTDP KPRLRWTVEL HERFVDAVAQ LGGPDKATPK TIMRVMGVKG 120 LTLYHLKSHL QKFRLGKQPH KDFNEQSIKD GMRVYYTIHI TAASALELQR NIGSSSAMIG 180 RNMNEMQMEV QRRLHEQLEV QKNLQLRIEA QGKYMQSILE KAYHTLAREN MGTGMKGVAS 240 AGQGSTEMGK RVCPYSGSGK SPLIWNDDLR LQDLGTASSC ISPEEDPFKG DHKVQVSPPS 300 MDSDPMSEIY DTKPLLLHGE SVCVGTNHKK FEASMKLERP SPQRSPLQPE RNSPMINATS 360 MAQGTINFLL DHNHNYY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 5e-18 | 81 | 137 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 5e-18 | 81 | 137 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 4e-18 | 81 | 137 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 4e-18 | 81 | 137 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 4e-18 | 81 | 137 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 4e-18 | 81 | 137 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 5e-18 | 81 | 137 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 5e-18 | 81 | 137 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 5e-18 | 81 | 137 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 5e-18 | 81 | 137 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 5e-18 | 81 | 137 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 5e-18 | 81 | 137 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061, ECO:0000269|PubMed:25081480, ECO:0000269|PubMed:26239308, ECO:0000305|PubMed:15592750}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi01g12780.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269|PubMed:15592750}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014504152.1 | 0.0 | myb family transcription factor APL-like | ||||
Swissprot | Q9SAK5 | 1e-100 | APL_ARATH; Myb family transcription factor APL | ||||
TrEMBL | A0A0L9TFK8 | 0.0 | A0A0L9TFK8_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SAB4 | 0.0 | A0A0S3SAB4_PHAAN; Uncharacterized protein | ||||
STRING | XP_007133444.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4964 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79430.2 | 2e-98 | G2-like family protein |
Publications ? help Back to Top | |||
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