PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g12370.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Trihelix
Protein Properties Length: 447aa    MW: 51306.8 Da    PI: 9.8055
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g12370.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix33.51.1e-10791263786
         trihelix  37 kmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      k++  g++rs+k+Ckek+en+ k+ k++ke+++++   + +t+++fdql+
  Vradi01g12370.1  79 KLEGLGYHRSAKKCKEKFENVYKYNKRTKENKSGK--SHGKTYKFFDQLQ 126
                      56678*************************99996..55667******98 PP
2trihelix102.92.5e-32317402187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW+k ev+aLi++r++++++++++  k+plWe++s++m++ g++rs+k+Ckekwen+nk++kk++e++k+r  e+s+tcpyf++l+a
  Vradi01g12370.1 317 RWPKAEVHALIRLRTSLDTKYQENGPKAPLWEDISIAMQRLGYNRSAKRCKEKWENINKYFKKMRENNKER-RENSKTCPYFHELDA 402
                      8*********************************************************************8.78889********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171562102IPR001005SANT/Myb domain
PfamPF138371.5E-679128No hitNo description
SMARTSM007170.025314376IPR001005SANT/Myb domain
PfamPF138375.7E-22316403No hitNo description
PROSITE profilePS500907.027316374IPR017877Myb-like domain
CDDcd122036.96E-24317381No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MQLGDSSVLE ISSHSEPEMA VAAATEGAAH GGEDDGGDDE MIGVDVDANS GEGNEGNKMS  60
FGGNRWPRQE TLALLKIRKL EGLGYHRSAK KCKEKFENVY KYNKRTKENK SGKSHGKTYK  120
FFDQLQALEN HHFTISYPTK PQPTLATTNT LTLPARQSDH ASDEDLEERY RRKRKWKDYF  180
RRLTRKVLLK QEEMQKKFLE AMDKRERERV SQQDNWRIQE MARINREHEI LVQERSTAAA  240
KDAAVIALLQ KMYGQQNTTQ HVQVQPPEQQ NQTTLQSQPP TPMPNNNFEV KKLNNGHHSA  300
TSTSTVTTSP ATSSSSRWPK AEVHALIRLR TSLDTKYQEN GPKAPLWEDI SIAMQRLGYN  360
RSAKRCKEKW ENINKYFKKM RENNKERREN SKTCPYFHEL DAIYKEKSLS QNPFGVFQNM  420
KPNEMMMMEP LMVMIGVVGQ TSATMN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g12370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007152025.10.0hypothetical protein PHAVU_004G095200g
SwissprotQ391178e-76TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLV7C1J10.0V7C1J1_PHAVU; Uncharacterized protein
STRINGXP_007152025.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.22e-66Trihelix family protein