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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi01g12350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | Trihelix | ||||||||
Protein Properties | Length: 443aa MW: 50622.2 Da PI: 6.694 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 84.2 | 1.6e-26 | 117 | 212 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 +Wt+++v++Li+a+++++e+ +++ +kk++W++vsk+m+erg+++sp+qC++k+++lnkrykk++++ +++ +++++++ +++d Vradi01g12350.1 117 KWTDKMVRLLITAVSYIGEDATSDCggarrkitvlQKKGKWKSVSKVMAERGYRVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENPSLLD 210 7*********************9988889999999**********************************************6699999998887 PP trihelix 84 ql 85 + Vradi01g12350.1 211 VI 212 66 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 4.1E-24 | 115 | 239 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 443 aa Download sequence Send to blast |
MEGNLSQGGM VQGGSSFGGF DLPGSMRVHR QGHHPHSMSQ HQTHPCQGPS VHSSVHDGFP 60 LTMGTLQNCD QTIAMTEFSQ GDRNKNSPSD ESFAEEGVDG HHEGGRGKKG SPWQRVKWTD 120 KMVRLLITAV SYIGEDATSD CGGARRKITV LQKKGKWKSV SKVMAERGYR VSPQQCEDKF 180 NDLNKRYKKL NDMLGRGTSC QVVENPSLLD VIDYLSEKEK DEVRKILSSK HLFYEEMCSY 240 HNCNRLHLPH DLELQRSLQL AHRNRDDHDS DDVRRSHHDD HDEDDLEVET DDHDDFEENY 300 ATHADSRGVY GEAGRPMKRS KPGQGHEDAA TFGSALNSQE YNKSSYPHMV QSDVNQAAPE 360 KMSSPWLQKQ WFESRSLQLE EQKLQIQVEM LELEKQRFKW QKFSKKKERE LEKLKLENER 420 MKLENERIAL ELKRKGAGAD FN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi01g12350.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014506918.1 | 0.0 | uncharacterized protein LOC106766681 isoform X1 | ||||
TrEMBL | A0A1S3ULH9 | 0.0 | A0A1S3ULH9_VIGRR; uncharacterized protein LOC106766681 isoform X1 | ||||
STRING | XP_007152028.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5001 | 31 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21200.1 | 1e-145 | sequence-specific DNA binding transcription factors |