PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g12350.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Trihelix
Protein Properties Length: 443aa    MW: 50622.2 Da    PI: 6.694
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g12350.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix84.21.6e-26117212185
         trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 
                      +Wt+++v++Li+a+++++e+  +++          +kk++W++vsk+m+erg+++sp+qC++k+++lnkrykk++++ +++ +++++++ +++d
  Vradi01g12350.1 117 KWTDKMVRLLITAVSYIGEDATSDCggarrkitvlQKKGKWKSVSKVMAERGYRVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENPSLLD 210
                      7*********************9988889999999**********************************************6699999998887 PP

         trihelix  84 ql 85 
                       +
  Vradi01g12350.1 211 VI 212
                      66 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.1E-24115239No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MEGNLSQGGM VQGGSSFGGF DLPGSMRVHR QGHHPHSMSQ HQTHPCQGPS VHSSVHDGFP  60
LTMGTLQNCD QTIAMTEFSQ GDRNKNSPSD ESFAEEGVDG HHEGGRGKKG SPWQRVKWTD  120
KMVRLLITAV SYIGEDATSD CGGARRKITV LQKKGKWKSV SKVMAERGYR VSPQQCEDKF  180
NDLNKRYKKL NDMLGRGTSC QVVENPSLLD VIDYLSEKEK DEVRKILSSK HLFYEEMCSY  240
HNCNRLHLPH DLELQRSLQL AHRNRDDHDS DDVRRSHHDD HDEDDLEVET DDHDDFEENY  300
ATHADSRGVY GEAGRPMKRS KPGQGHEDAA TFGSALNSQE YNKSSYPHMV QSDVNQAAPE  360
KMSSPWLQKQ WFESRSLQLE EQKLQIQVEM LELEKQRFKW QKFSKKKERE LEKLKLENER  420
MKLENERIAL ELKRKGAGAD FN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g12350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014506918.10.0uncharacterized protein LOC106766681 isoform X1
TrEMBLA0A1S3ULH90.0A0A1S3ULH9_VIGRR; uncharacterized protein LOC106766681 isoform X1
STRINGXP_007152028.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50013157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-145sequence-specific DNA binding transcription factors