![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vradi01g11980.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 680aa MW: 78239.5 Da PI: 6.9902 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 64.2 | 3.5e-20 | 57 | 142 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+eYA ++GF vr+++skk+++n+ t ++vCs++gk ++ + e +t++++r +C a ++++++ +g+w+v +++eHnH+++p Vradi01g11980.1 57 SFYREYADSCGFAVRITSSKKNSNNQ-LTFMKLVCSRQGKYISSISP---EFKTQPSQRNECPAGITISLK-EGRWYVGIVVTEHNHDMCP 142 5*******************996666.9************9998777...99*******************.****************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.3E-17 | 57 | 142 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 680 aa Download sequence Send to blast |
MSMLQNMEPL DMEVVELEAV ELEGIPSCEV NTDDVDNMDN NVPKLQMSFD TIEQVKSFYR 60 EYADSCGFAV RITSSKKNSN NQLTFMKLVC SRQGKYISSI SPEFKTQPSQ RNECPAGITI 120 SLKEGRWYVG IVVTEHNHDM CPKNSNLIRG NRKLNMHSKH TLTMNYDAGV RINKRFISLV 180 NDAGGYENIQ FIERDARNYI GQQRRSFCKD GDGQALLKYF SRMRELNNEF FYEMEMDEHN 240 RXCSVFWADP RSCAACVDFA ENTSTFTWLF TYWLRCMSNK PLIGIVTDQF SPDDFELGWG 300 NLITCHRLER NEWLSSLLEE RKRWVPCYMK HQFCGGMSTT QRSEGMNAFF DGFINSTTTL 360 QQFVLQYENA LRQKAQKENE ADFASLNSIV PCGSQSLIER QYQIEYTQAK FVEVQKEFRS 420 RMNCFNKNMS TEGCRTTYNV KEEFIWEGQC GSKFYVVDYD PLTTDIHCSF KLFEFRGILC 480 RHCLLVLEIP NFVFYDIAEE ACHSDTASKK LLSDLNSIGR SLGVRTSPTL MLVNDDGFDM 540 HGHPPSSEEG RPPCEVDGLV VRSPVSVKRK GRPRTKRMQS TLEKLTKKKK SHGAKNKHTT 600 NHSERTDCHV TNIHNVEDLG SQQMFESQVS QSGFMSLLTS AHYNNDNVDL SPLLTSVLIH 660 TFRRNFKTLG RTMFLILIM* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 567 | 589 | KRKGRPRTKRMQSTLEKLTKKKK |
2 | 570 | 578 | GRPRTKRMQ |
3 | 587 | 591 | KKKSH |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vradi01g11980.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017416643.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A1S3VAT3 | 0.0 | A0A1S3VAT3_VIGRR; protein FAR-RED IMPAIRED RESPONSE 1-like |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G15090.1 | 2e-60 | FAR1 family protein |