PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g11980.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family FAR1
Protein Properties Length: 680aa    MW: 78239.5 Da    PI: 6.9902
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g11980.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.23.5e-2057142191
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                      +fY+eYA ++GF vr+++skk+++n+  t  ++vCs++gk  ++ +    e +t++++r +C a ++++++ +g+w+v  +++eHnH+++p
  Vradi01g11980.1  57 SFYREYADSCGFAVRITSSKKNSNNQ-LTFMKLVCSRQGKYISSISP---EFKTQPSQRNECPAGITISLK-EGRWYVGIVVTEHNHDMCP 142
                      5*******************996666.9************9998777...99*******************.****************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-1757142IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MSMLQNMEPL DMEVVELEAV ELEGIPSCEV NTDDVDNMDN NVPKLQMSFD TIEQVKSFYR  60
EYADSCGFAV RITSSKKNSN NQLTFMKLVC SRQGKYISSI SPEFKTQPSQ RNECPAGITI  120
SLKEGRWYVG IVVTEHNHDM CPKNSNLIRG NRKLNMHSKH TLTMNYDAGV RINKRFISLV  180
NDAGGYENIQ FIERDARNYI GQQRRSFCKD GDGQALLKYF SRMRELNNEF FYEMEMDEHN  240
RXCSVFWADP RSCAACVDFA ENTSTFTWLF TYWLRCMSNK PLIGIVTDQF SPDDFELGWG  300
NLITCHRLER NEWLSSLLEE RKRWVPCYMK HQFCGGMSTT QRSEGMNAFF DGFINSTTTL  360
QQFVLQYENA LRQKAQKENE ADFASLNSIV PCGSQSLIER QYQIEYTQAK FVEVQKEFRS  420
RMNCFNKNMS TEGCRTTYNV KEEFIWEGQC GSKFYVVDYD PLTTDIHCSF KLFEFRGILC  480
RHCLLVLEIP NFVFYDIAEE ACHSDTASKK LLSDLNSIGR SLGVRTSPTL MLVNDDGFDM  540
HGHPPSSEEG RPPCEVDGLV VRSPVSVKRK GRPRTKRMQS TLEKLTKKKK SHGAKNKHTT  600
NHSERTDCHV TNIHNVEDLG SQQMFESQVS QSGFMSLLTS AHYNNDNVDL SPLLTSVLIH  660
TFRRNFKTLG RTMFLILIM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1567589KRKGRPRTKRMQSTLEKLTKKKK
2570578GRPRTKRMQ
3587591KKKSH
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g11980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017416643.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A1S3VAT30.0A0A1S3VAT3_VIGRR; protein FAR-RED IMPAIRED RESPONSE 1-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.12e-60FAR1 family protein