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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi01g07110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C3H | ||||||||
Protein Properties | Length: 426aa MW: 46205.1 Da PI: 7.7478 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.7 | 2.3e-09 | 100 | 121 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C+++ + G C+yG+rCkF H+ Vradi01g07110.1 100 KVCNYWIQ-GNCSYGERCKFLHS 121 68******.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 9.272 | 18 | 44 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.21 | 20 | 43 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.277 | 97 | 123 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-6 | 98 | 122 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.89E-7 | 98 | 121 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-7 | 100 | 120 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.0E-6 | 100 | 121 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:2.130.10.10 | 5.5E-50 | 121 | 416 | IPR015943 | WD40/YVTN repeat-like-containing domain |
SMART | SM00320 | 1.2E-6 | 127 | 166 | IPR001680 | WD40 repeat |
SuperFamily | SSF50978 | 1.59E-50 | 128 | 417 | IPR017986 | WD40-repeat-containing domain |
Pfam | PF00400 | 9.8E-5 | 130 | 166 | IPR001680 | WD40 repeat |
PROSITE profile | PS50294 | 24.31 | 134 | 424 | IPR017986 | WD40-repeat-containing domain |
PROSITE profile | PS50082 | 13.85 | 134 | 166 | IPR001680 | WD40 repeat |
PROSITE pattern | PS00678 | 0 | 153 | 167 | IPR019775 | WD40 repeat, conserved site |
PRINTS | PR00320 | 2.3E-6 | 153 | 167 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 4.4 | 207 | 244 | IPR001680 | WD40 repeat |
SMART | SM00320 | 3.7E-4 | 251 | 288 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 0.0012 | 255 | 288 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 13.282 | 258 | 297 | IPR001680 | WD40 repeat |
PRINTS | PR00320 | 2.3E-6 | 275 | 289 | IPR020472 | G-protein beta WD-40 repeat |
PROSITE pattern | PS00678 | 0 | 275 | 289 | IPR019775 | WD40 repeat, conserved site |
SMART | SM00320 | 2.1E-4 | 291 | 328 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 0.0033 | 293 | 327 | IPR001680 | WD40 repeat |
PRINTS | PR00320 | 2.3E-6 | 315 | 329 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 0.6 | 332 | 375 | IPR001680 | WD40 repeat |
SMART | SM00320 | 2.2 | 378 | 415 | IPR001680 | WD40 repeat |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 426 aa Download sequence Send to blast |
MDVDGGSKRV YNRLGGDGKH QKVCFHWQAG KCNRYPCPFL HSELPASSHS NGASSKRAYD 60 NSGLSGFSGQ RGRPNFNNTW GRGGGRGGGG GRGVVVKAEK VCNYWIQGNC SYGERCKFLH 120 SWKVGDGFSL LTQLEGHQKA VSAIAFPSGS DKLYTGSTDE TARIWDCQSG KVCVGVINLG 180 GEVGCMISEG PWVFVGIPNS VKAWNTQNLM ELSLNGPVGQ VYALVVNNDM LFAGTQDGSI 240 LAWKFNVGNN CFEPAASLKG HSRGVVSLVV GANRLYSGSM DNTIRVWNLE TLQCIQTLTE 300 HTSVVMSVLC WEQFLLSCSL DKTVKVWYAT ESGNLEVTYT HNEEHGILTL CGMHDSQGKP 360 ILLCACNDNT VRLYDLPSFA ERGKILTKQE VRAMQIGPNG IFFTGDGTGE VRVWNWSAET 420 TATVQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6g6m_A | 6e-26 | 122 | 415 | 1 | 323 | Tako8 |
6g6n_A | 6e-26 | 122 | 415 | 1 | 323 | Tako8 |
6g6n_B | 6e-26 | 122 | 415 | 1 | 323 | Tako8 |
6g6n_C | 6e-26 | 122 | 415 | 1 | 323 | Tako8 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 81 | 91 | RGGGRGGGGGR |
2 | 83 | 90 | GGRGGGGG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi01g07110.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014515243.1 | 0.0 | zinc finger CCCH domain-containing protein 48 | ||||
Swissprot | Q9FNZ2 | 0.0 | C3H48_ARATH; Zinc finger CCCH domain-containing protein 48 | ||||
TrEMBL | A0A1S3VA61 | 0.0 | A0A1S3VA61_VIGRR; zinc finger CCCH domain-containing protein 48 | ||||
STRING | XP_007152351.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7446 | 33 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25440.1 | 0.0 | zinc finger WD40 repeat protein 1 |