PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g07110.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 426aa    MW: 46205.1 Da    PI: 7.7478
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g07110.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.72.3e-09100121426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      + C+++ + G C+yG+rCkF H+
  Vradi01g07110.1 100 KVCNYWIQ-GNCSYGERCKFLHS 121
                      68******.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.2721844IPR000571Zinc finger, CCCH-type
SMARTSM003560.212043IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.27797123IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-698122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-798121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-7100120IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-6100121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.105.5E-50121416IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.2E-6127166IPR001680WD40 repeat
SuperFamilySSF509781.59E-50128417IPR017986WD40-repeat-containing domain
PfamPF004009.8E-5130166IPR001680WD40 repeat
PROSITE profilePS5029424.31134424IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.85134166IPR001680WD40 repeat
PROSITE patternPS006780153167IPR019775WD40 repeat, conserved site
PRINTSPR003202.3E-6153167IPR020472G-protein beta WD-40 repeat
SMARTSM003204.4207244IPR001680WD40 repeat
SMARTSM003203.7E-4251288IPR001680WD40 repeat
PfamPF004000.0012255288IPR001680WD40 repeat
PROSITE profilePS5008213.282258297IPR001680WD40 repeat
PRINTSPR003202.3E-6275289IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780275289IPR019775WD40 repeat, conserved site
SMARTSM003202.1E-4291328IPR001680WD40 repeat
PfamPF004000.0033293327IPR001680WD40 repeat
PRINTSPR003202.3E-6315329IPR020472G-protein beta WD-40 repeat
SMARTSM003200.6332375IPR001680WD40 repeat
SMARTSM003202.2378415IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MDVDGGSKRV YNRLGGDGKH QKVCFHWQAG KCNRYPCPFL HSELPASSHS NGASSKRAYD  60
NSGLSGFSGQ RGRPNFNNTW GRGGGRGGGG GRGVVVKAEK VCNYWIQGNC SYGERCKFLH  120
SWKVGDGFSL LTQLEGHQKA VSAIAFPSGS DKLYTGSTDE TARIWDCQSG KVCVGVINLG  180
GEVGCMISEG PWVFVGIPNS VKAWNTQNLM ELSLNGPVGQ VYALVVNNDM LFAGTQDGSI  240
LAWKFNVGNN CFEPAASLKG HSRGVVSLVV GANRLYSGSM DNTIRVWNLE TLQCIQTLTE  300
HTSVVMSVLC WEQFLLSCSL DKTVKVWYAT ESGNLEVTYT HNEEHGILTL CGMHDSQGKP  360
ILLCACNDNT VRLYDLPSFA ERGKILTKQE VRAMQIGPNG IFFTGDGTGE VRVWNWSAET  420
TATVQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A6e-261224151323Tako8
6g6n_A6e-261224151323Tako8
6g6n_B6e-261224151323Tako8
6g6n_C6e-261224151323Tako8
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18191RGGGRGGGGGR
28390GGRGGGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g07110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014515243.10.0zinc finger CCCH domain-containing protein 48
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A1S3VA610.0A0A1S3VA61_VIGRR; zinc finger CCCH domain-containing protein 48
STRINGXP_007152351.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74463343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1