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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi01g05560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ZF-HD | ||||||||
Protein Properties | Length: 173aa MW: 19032.2 Da PI: 8.291 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 91.8 | 6e-29 | 11 | 64 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 + +Y+eCl+NhAaslG++a+DGCgEf+ + + ++++l+CaACgCHRnFHR+ + Vradi01g05560.1 11 NSMYRECLRNHAASLGSYATDGCGEFTLD--IDVSSSSLQCAACGCHRNFHRKVTC 64 679*************************8..66789*****************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 8.9E-24 | 13 | 63 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 22.726 | 14 | 62 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.8E-24 | 14 | 61 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-20 | 14 | 61 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-28 | 89 | 159 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.7E-15 | 91 | 157 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 5.2E-28 | 98 | 156 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MENSSSSSSS NSMYRECLRN HAASLGSYAT DGCGEFTLDI DVSSSSLQCA ACGCHRNFHR 60 KVTCPSAMEG LQGGGSGDMM EYSGGDVGRM EVGERSSRKR FRTKFSAEQK EKMLAFAEKL 120 GWKLQRREVD DEIERFCKSV GVTRQVFKVW MHNHKNNSNS SNSSANLSSL TQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-23 | 99 | 161 | 18 | 79 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein. Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi01g05560.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014506983.1 | 1e-125 | zinc-finger homeodomain protein 1 | ||||
Swissprot | Q9SB61 | 3e-39 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | A0A1S3ULP1 | 1e-124 | A0A1S3ULP1_VIGRR; zinc-finger homeodomain protein 1 | ||||
STRING | XP_007152632.1 | 1e-101 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7982 | 28 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 1e-32 | homeobox protein 22 |
Publications ? help Back to Top | |||
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