![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vradi01g05050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | WOX | ||||||||
Protein Properties | Length: 355aa MW: 40182.8 Da PI: 6.9601 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 68.4 | 9e-22 | 85 | 144 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql++Leel+++ +r+psae++++++++l +++ ++V++WFqN++a+e++ Vradi01g05050.1 85 SRWNPTREQLRALEELYRRgTRTPSAEQIQHITAQLrrfgNIEGKNVFYWFQNHKARERQ 144 7*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 110.8 | 7.6e-36 | 84 | 146 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RW+Pt eQ++ Leely++G+rtP++e+iq+ita+L+++G+ie+kNVfyWFQN+kaRerqk+ Vradi01g05050.1 84 SSRWNPTREQLRALEELYRRGTRTPSAEQIQHITAQLRRFGNIEGKNVFYWFQNHKARERQKR 146 79***********************************************************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 2.7E-4 | 82 | 149 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.9E-19 | 85 | 144 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-9 | 85 | 144 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.72E-11 | 85 | 147 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 7.98E-7 | 86 | 146 | No hit | No description |
PROSITE profile | PS50071 | 11.483 | 90 | 145 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 355 aa Download sequence Send to blast |
MWMVGDNEGG EFSMVDHSFS GRKLRPLMPR PMISSNTAPP TTTLSLTHHH GNDFPSQYDH 60 HHLASVAEQN KREQFNGAAP VVVSSRWNPT REQLRALEEL YRRGTRTPSA EQIQHITAQL 120 RRFGNIEGKN VFYWFQNHKA RERQKRRRQM ESEAETPEKK ESKIDTVVFN LMRLHGCNSN 180 PQESDSTQRT AKAVAVESRT VGWLQFDEGE LQERRNLLER NATWHVMQLP CPSPAAPVTS 240 LINSPPNASS AISMATTTTT VTTKMDPNLI KTHDLSFYIS PQRENSVIYL SSSSSTSEDD 300 NCVESQTLQF FPLRSGGDVS SDNMRDKETE ISASAMNCNN FTPSQFFEFL PMKE* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vradi01g05050.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_014508867.1 | 0.0 | WUSCHEL-related homeobox 1-like isoform X1 | ||||
TrEMBL | A0A1S3USB6 | 0.0 | A0A1S3USB6_VIGRR; WUSCHEL-related homeobox 1-like isoform X1 | ||||
STRING | XP_007163960.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2892 | 34 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G18010.1 | 2e-53 | WUSCHEL related homeobox 1 |