PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g05050.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WOX
Protein Properties Length: 355aa    MW: 40182.8 Da    PI: 6.9601
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g05050.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.49e-2285144357
                      --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                      +R+++t+eql++Leel+++ +r+psae++++++++l    +++ ++V++WFqN++a+e++
  Vradi01g05050.1  85 SRWNPTREQLRALEELYRRgTRTPSAEQIQHITAQLrrfgNIEGKNVFYWFQNHKARERQ 144
                      7*****************99**************************************97 PP

2Wus_type_Homeobox110.87.6e-3684146365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+Pt eQ++ Leely++G+rtP++e+iq+ita+L+++G+ie+kNVfyWFQN+kaRerqk+
    Vradi01g05050.1  84 SSRWNPTREQLRALEELYRRGTRTPSAEQIQHITAQLRRFGNIEGKNVFYWFQNHKARERQKR 146
                        79***********************************************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003892.7E-482149IPR001356Homeobox domain
PfamPF000461.9E-1985144IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.9E-985144IPR009057Homeodomain-like
SuperFamilySSF466893.72E-1185147IPR009057Homeodomain-like
CDDcd000867.98E-786146No hitNo description
PROSITE profilePS5007111.48390145IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MWMVGDNEGG EFSMVDHSFS GRKLRPLMPR PMISSNTAPP TTTLSLTHHH GNDFPSQYDH  60
HHLASVAEQN KREQFNGAAP VVVSSRWNPT REQLRALEEL YRRGTRTPSA EQIQHITAQL  120
RRFGNIEGKN VFYWFQNHKA RERQKRRRQM ESEAETPEKK ESKIDTVVFN LMRLHGCNSN  180
PQESDSTQRT AKAVAVESRT VGWLQFDEGE LQERRNLLER NATWHVMQLP CPSPAAPVTS  240
LINSPPNASS AISMATTTTT VTTKMDPNLI KTHDLSFYIS PQRENSVIYL SSSSSTSEDD  300
NCVESQTLQF FPLRSGGDVS SDNMRDKETE ISASAMNCNN FTPSQFFEFL PMKE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g05050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014508867.10.0WUSCHEL-related homeobox 1-like isoform X1
TrEMBLA0A1S3USB60.0A0A1S3USB6_VIGRR; WUSCHEL-related homeobox 1-like isoform X1
STRINGXP_007163960.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28923471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.12e-53WUSCHEL related homeobox 1