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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi01g04230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | Trihelix | ||||||||
Protein Properties | Length: 243aa MW: 27803.9 Da PI: 4.5216 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 48.6 | 2.1e-15 | 64 | 149 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++e+ +L+e+ ++ +l+r++l+ W ev++k+ +e + ers +qC++ +++l+++ykk+k+ + + s ++pyf++++ Vradi01g04230.1 64 EWSEHETFVLLEVWGDKFLQLGRNSLRSEEWHEVAEKVsEELKAERSVTQCRSVLDKLKRKYKKEKTKMDEM-GMGSCKWPYFKKMD 149 5*************************************788999**************************97.666779*******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.1E-19 | 63 | 151 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
DENEHEDFND DNDEGENGYD ENDIVGYPRI PKKRKVVVAP GSYEFAPRFK LSYGSRGSGS 60 SGEEWSEHET FVLLEVWGDK FLQLGRNSLR SEEWHEVAEK VSEELKAERS VTQCRSVLDK 120 LKRKYKKEKT KMDEMGMGSC KWPYFKKMDM LMASSARQEY GLACGVDSGD KRQQMMELEK 180 MRLDFNRELE LQKKQILERA QAEIAKIQEG DEEDTDTSTE NLIDNPGKDG DILIECPSFG 240 GT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi01g04230.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027924384.1 | 2e-98 | trihelix transcription factor ASIL2 | ||||
Refseq | XP_027924385.1 | 2e-98 | trihelix transcription factor ASIL2 | ||||
Refseq | XP_027924386.1 | 2e-98 | trihelix transcription factor ASIL2 | ||||
Refseq | XP_027924387.1 | 2e-98 | trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A4D6LU83 | 1e-98 | A0A4D6LU83_VIGUN; Uncharacterized protein | ||||
STRING | XP_007152813.1 | 2e-90 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2441 | 34 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24490.1 | 4e-35 | Trihelix family protein |