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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi01g03350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C3H | ||||||||
Protein Properties | Length: 353aa MW: 39242.9 Da PI: 7.2872 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.7 | 2e-08 | 128 | 149 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C+ f++ G Ck Gd+C FaHg Vradi01g03350.1 128 AACPEFRK-GSCKKGDTCEFAHG 149 78******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 6.08 | 76 | 113 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.7E-5 | 124 | 150 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.915 | 125 | 151 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-6 | 128 | 149 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.9E-5 | 129 | 151 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.643 | 159 | 183 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 14 | 159 | 182 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006979 | Biological Process | response to oxidative stress | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MMLGEHHRAN PTVHVPPWPT HDDPTAEMYS SFLSNDVNAA EYSPYYIQEA LTALQRYLPA 60 NETDADSDSE AQPDAPVDAY SCDHFRMYEF KVRRCARGRS HDWTECPYAH PGEKARRRDP 120 RKYHYSGAAC PEFRKGSCKK GDTCEFAHGV FECWLHPARY RTQPCKDGTS CRRRVCFFAH 180 TPEQLRLVPM QSPRSSGDSY DGSPMRQVLQ SSAFMSSPAA SLSPPESPPV SPSMNEMVAS 240 LRNLQLGKMK SMPHNRNVSV GSPGYGSPRG SVLRPGFCSL PTTPTQQPGR SGVNYLDIWE 300 QSVEEEPVME RVESGRGIRA KMFEKLSKEN SLEGSGQGSG APDVGWVSEL VK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi01g03350.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014515626.1 | 0.0 | zinc finger CCCH domain-containing protein 20 | ||||
Swissprot | O82199 | 1e-139 | C3H20_ARATH; Zinc finger CCCH domain-containing protein 20 | ||||
TrEMBL | A0A1S3VB94 | 0.0 | A0A1S3VB94_VIGRR; zinc finger CCCH domain-containing protein 20 | ||||
STRING | XP_007152945.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2056 | 31 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19810.1 | 1e-141 | C3H family protein |
Publications ? help Back to Top | |||
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