PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g02500.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WOX
Protein Properties Length: 361aa    MW: 40770.6 Da    PI: 8.3475
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g02500.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox69.63.7e-2280139357
                      --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                      +R+++t+eql++Leel+++ +r+psae++++++++l    +++ ++V++WFqN++a+e++
  Vradi01g02500.1  80 SRWNPTPEQLRALEELYRRgTRTPSAEQIQQITAQLrrfgKIEGKNVFYWFQNHKARERQ 139
                      7*****************99**************************************97 PP
2Wus_type_Homeobox114.74.6e-3779141365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+PtpeQ++ Leely++G+rtP++e+iq+ita+L+++Gkie+kNVfyWFQN+kaRerqk+
    Vradi01g02500.1  79 SSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQKR 141
                        79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003899.5E-577144IPR001356Homeobox domain
SuperFamilySSF466899.2E-1380146IPR009057Homeodomain-like
PfamPF000467.1E-2080139IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.7E-980139IPR009057Homeodomain-like
CDDcd000863.71E-781141No hitNo description
PROSITE profilePS5007111.45185140IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048513Biological Processanimal organ development
GO:0099402Biological Processplant organ development
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MVGYNEAADF TMPDYALNGR KLRPLMPRPV SSPNNTPNAN SPCLTRIHHG NDFFSQYHNL  60
ASVADQGKRE FNPPPVVVSS RWNPTPEQLR ALEELYRRGT RTPSAEQIQQ ITAQLRRFGK  120
IEGKNVFYWF QNHKARERQK RRRQMESAAE GHHTRDFDGT LEKKDLGASR TVFEVEQTKN  180
WAPSTNCSTL AKESVSIQRA AKAAVADCRT DGWLQFDEGE LQHTRNLMER NATWHMMQLS  240
CPSPTTVSPH FINAPPTIST ASMATTPSIT ARVMDPKLIK THDLSFFISP NRENGVIHLS  300
SINTYTTPDD NSVESQTLQL FPVRNVDESS DNINHQKETE VSVSAMNAPS QFFEFLPLKN  360
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g02500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014514810.10.0WUSCHEL-related homeobox 1-like
TrEMBLA0A1S3V9480.0A0A1S3V948_VIGRR; WUSCHEL-related homeobox 1-like
STRINGXP_007160532.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28923471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.16e-59WUSCHEL related homeobox 1