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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi01g01960.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C3H | ||||||||
Protein Properties | Length: 310aa MW: 33931.5 Da PI: 6.4197 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.2 | 2.9e-08 | 121 | 145 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaH+ Vradi01g01960.1 121 FKTKLCCKFRA-GTCPYITNCNFAHS 145 69*********.*************8 PP | |||||||
2 | zf-CCCH | 18.5 | 3.6e-06 | 202 | 214 | 14 | 26 |
--TTTTT-SS-SS CS zf-CCCH 14 tCkyGdrCkFaHg 26 +C++G++C+FaHg Vradi01g01960.1 202 YCPFGNKCHFAHG 214 9***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 3.0E-14 | 118 | 153 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.41E-8 | 118 | 151 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.84 | 120 | 147 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0035 | 120 | 146 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-5 | 121 | 145 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 14 | 195 | 215 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-6 | 202 | 218 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 7.883 | 202 | 216 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MFKLIFVSDC LEEDSLVRTR KETVDSISSA AAVLGALLDG NVVQIITGGG GGGESWSGDQ 60 ADWATEDEYR YWNSNNNNNG DAESTPSNSN YESRSEPPSK KSRNSQDGSS NRSKAIGKMF 120 FKTKLCCKFR AGTCPYITNC NFAHSIEELR RPPPNWQEIV AAHEEEKAVM AEPREEFQIP 180 TVGSSTFAGD TMQRSYKGRH WYCPFGNKCH FAHGATELHR YGGGLMEGES RDGASVVGCD 240 TNKGAASKAS ADNVVAAVTP VAHSDVYHIG VPSQRPSIVI QRPGQRTHQK WKGPDKISRI 300 YGDWIDDIE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi01g01960.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028789152.1 | 1e-122 | zinc finger CCCH domain-containing protein 12-like | ||||
Refseq | XP_028802815.1 | 1e-122 | zinc finger CCCH domain-containing protein 12-like | ||||
Swissprot | Q9LQM3 | 2e-51 | C3H12_ARATH; Zinc finger CCCH domain-containing protein 12 | ||||
TrEMBL | A0A1R3JEQ5 | 1e-121 | A0A1R3JEQ5_9ROSI; Zinc finger, CCCH-type | ||||
STRING | EMJ10512 | 1e-109 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7751 | 33 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 3e-53 | C3H family protein |