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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi01g01750.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ZF-HD | ||||||||
Protein Properties | Length: 155aa MW: 16673.7 Da PI: 8.3023 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 82.7 | 4.4e-26 | 50 | 97 | 4 | 50 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHR 50 v+YkeClkNh aslGgha+DGCgEfmps+ ++ +++++kCaACgCHR Vradi01g01750.1 50 VVYKECLKNHVASLGGHALDGCGEFMPSPAATaDDPSSIKCAACGCHR 97 89**************************9999889************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 4.9E-22 | 50 | 97 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 8.0E-19 | 50 | 97 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 23.341 | 52 | 103 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.8E-24 | 52 | 97 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MGFLGLIVVL EIEVDGREGK QRAGISPKPV SFSNGVLKRH HANNRTAAPV VYKECLKNHV 60 ASLGGHALDG CGEFMPSPAA TADDPSSIKC AACGCHRAEG EDARVRRQSG VEDAEARRKH 120 GYGVLQRGWC GQRSPQSVDA QQQEHFCQKG QPQW* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi01g01750.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 1e-102 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014511481.1 | 1e-45 | zinc-finger homeodomain protein 9 | ||||
Refseq | XP_017438740.1 | 1e-45 | PREDICTED: zinc-finger homeodomain protein 9 | ||||
Swissprot | Q9LXG0 | 2e-26 | ZHD8_ARATH; Zinc-finger homeodomain protein 8 | ||||
TrEMBL | A0A0L9VP28 | 3e-44 | A0A0L9VP28_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3T8B1 | 3e-44 | A0A0S3T8B1_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A1S3UZH5 | 3e-44 | A0A1S3UZH5_VIGRR; zinc-finger homeodomain protein 9 | ||||
STRING | XP_007151228.1 | 4e-41 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1979 | 31 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15210.1 | 7e-29 | homeobox protein 30 |
Publications ? help Back to Top | |||
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