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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0179s00230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ZF-HD | ||||||||
Protein Properties | Length: 170aa MW: 19100.4 Da PI: 6.8376 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 31.4 | 4.6e-10 | 5 | 31 | 34 | 60 |
ZF-HD_dimer 34 eegtaaalkCaACgCHRnFHRreveee 60 e++t +a+ C AC+CHRnFH +e ++e Vradi0179s00230.1 5 EDNTLEAVICVACDCHRNFHCKEIDNE 31 557999****************98875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 3.0E-5 | 1 | 30 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.8E-7 | 2 | 28 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF05701 | 1.2E-26 | 100 | 168 | IPR008545 | WEB family |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MSTVEDNTLE AVICVACDCH RNFHCKEIDN EMTSFHHRTQ SSPSLHHHHQ FSSYYHHRVP 60 QHPSAGSYLH YYLATPTNAQ TKFILDAQYS FFQSFHSLPE VASAKKELEE VNLNIEKATA 120 EISCLKVAAT SLKPELEQEK ATLAAIRQRK GMASITVASL EAELEKTRS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0179s00230.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 2e-95 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18350.1 | 1e-08 | homeobox protein 24 |