PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0179s00230.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ZF-HD
Protein Properties Length: 170aa    MW: 19100.4 Da    PI: 6.8376
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0179s00230.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer31.44.6e-105313460
        ZF-HD_dimer 34 eegtaaalkCaACgCHRnFHRreveee 60
                       e++t +a+ C AC+CHRnFH +e ++e
  Vradi0179s00230.1  5 EDNTLEAVICVACDCHRNFHCKEIDNE 31
                       557999****************98875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257743.0E-5130IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.8E-7228IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF057011.2E-26100168IPR008545WEB family
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MSTVEDNTLE AVICVACDCH RNFHCKEIDN EMTSFHHRTQ SSPSLHHHHQ FSSYYHHRVP  60
QHPSAGSYLH YYLATPTNAQ TKFILDAQYS FFQSFHSLPE VASAKKELEE VNLNIEKATA  120
EISCLKVAAT SLKPELEQEK ATLAAIRQRK GMASITVASL EAELEKTRS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0179s00230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150352e-95AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.11e-08homeobox protein 24