![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vradi0160s00310.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 308aa MW: 35263.3 Da PI: 9.6206 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 68.6 | 1.2e-21 | 42 | 100 | 1 | 59 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnk 59 rW+k+e++aL+++r++m+ ++r+++ k+plW++vskk++e g++rs+k+Ckek+en+ + Vradi0160s00310.1 42 RWPKEETMALLKIRSDMDVAFRDTNPKAPLWDQVSKKLAELGYSRSSKKCKEKFENIYN 100 8*******************************************************976 PP | |||||||
2 | trihelix | 88.5 | 7.6e-28 | 198 | 284 | 5 | 86 |
trihelix 5 qevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +ev aLi++r+e++ +++ ++ +k+plWe++s++m+ g+ers+k+Ckekwen+nk++k++ke +k++ +++s+tcpy+++le Vradi0160s00310.1 198 DEVEALIRLRTELDVQSQGNNnssngvSKGPLWEDISSAMKGLGYERSAKRCKEKWENINKYFKRMKEKNKRK-PQDSKTCPYYHHLE 284 79*********9999988544445666********************************************96.9***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.561 | 35 | 99 | IPR017877 | Myb-like domain |
SMART | SM00717 | 6.2E-4 | 39 | 101 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 1.6E-13 | 41 | 100 | No hit | No description |
CDD | cd12203 | 4.70E-18 | 41 | 98 | No hit | No description |
SMART | SM00717 | 0.14 | 151 | 259 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-4 | 155 | 170 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 3.5E-19 | 198 | 284 | No hit | No description |
CDD | cd12203 | 1.99E-17 | 198 | 264 | No hit | No description |
PROSITE profile | PS50090 | 5.982 | 198 | 257 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-4 | 227 | 256 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 308 aa Download sequence Send to blast |
MLEVSASPET PLANPEGGAA AVSEGLKAED GEAGDRNSAA SRWPKEETMA LLKIRSDMDV 60 AFRDTNPKAP LWDQVSKKLA ELGYSRSSKK CKEKFENIYN STTSCSGKGF RKRKLTQFLE 120 GLMREVIEKQ ETLQRKFVEV LEKCEKDRMA REEAWKKEEL ALIKKERELL AQERSIAAAK 180 DEVVLAFLRK FTQAEGMDEV EALIRLRTEL DVQSQGNNNS SNGVSKGPLW EDISSAMKGL 240 GYERSAKRCK EKWENINKYF KRMKEKNKRK PQDSKTCPYY HHLEVLYSKK PKRVDNSWEF 300 MAKTILY* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vradi0160s00310.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 1e-147 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020212111.1 | 1e-124 | trihelix transcription factor GT-2 | ||||
Swissprot | Q39117 | 3e-45 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
TrEMBL | A0A371EMQ7 | 1e-124 | A0A371EMQ7_MUCPR; Trihelix transcription factor GT-2 | ||||
STRING | GLYMA09G19750.2 | 1e-104 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF373 | 34 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G76890.2 | 7e-38 | Trihelix family protein |