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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0134s00230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | B3 | ||||||||
Protein Properties | Length: 259aa MW: 29743.7 Da PI: 8.6341 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37.8 | 3.4e-12 | 173 | 247 | 17 | 94 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ++p ++a+++ +++ + +t ++ +sW+vk+ + ks +++GW +F+++ +Lk gD ++F+++++++ ++v Vradi0134s00230.1 173 TIPYEYAKKFAEEHGRFVTFRV---GDKSWQVKFLFYEKSHYGRFSRGWHDFARDCDLKMGDACIFRMVDQENLVFNV 247 7999999998766666555554...45*******99888888889**********************88766664555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.123 | 1 | 65 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.94E-13 | 4 | 72 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-12 | 5 | 65 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 7.0E-7 | 163 | 253 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 8.31E-14 | 166 | 251 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 3.2E-15 | 172 | 251 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.08E-15 | 173 | 252 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 7.5E-10 | 173 | 247 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.926 | 174 | 253 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MTNPVTLSLP NGTKNKVHWV NKDGDVWLCN GWKEFAEYTK LDVSHFLVFR YEGNSCFNVI 60 IFGKSALEIE YPLSREAANE KVEEIIEGGE FSAKFSEKGS KRPKEEPQEK EEQKPKKYSK 120 NRACSDYSKH MNNGQKGVSH LPSSSLKTPM TTQARTPKPN DDLFICIKSE FPTIPYEYAK 180 KFAEEHGRFV TFRVGDKSWQ VKFLFYEKSH YGRFSRGWHD FARDCDLKMG DACIFRMVDQ 240 ENLVFNVSCL KVNKSPGS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0134s00230.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027913880.1 | 1e-145 | B3 domain-containing transcription factor VRN1-like | ||||
TrEMBL | A0A1S3TAT2 | 7e-86 | A0A1S3TAT2_VIGRR; B3 domain-containing transcription factor VRN1-like | ||||
STRING | XP_007153107.1 | 3e-74 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14023 | 10 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49475.1 | 1e-18 | B3 family protein |