PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0111s00200.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WOX
Protein Properties Length: 187aa    MW: 21551.1 Da    PI: 7.9949
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0111s00200.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox46.46.8e-152501457
                       HHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox 14 eLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                       +Leel+++  r+psa+++++++++l    +++ ++V++WFqN++a++++
  Vradi0111s00200.1  2 ILEELYRSgIRTPSASQIQQITTHLsfygRIEGKNVFYWFQNHKARDRQ 50
                       8******99*************************************996 PP

2Wus_type_Homeobox93.71.6e-301511464
  Wus_type_Homeobox 14 kiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       +iLeely+sG+rtP++++iq+it++L+ yG+ie+kNVfyWFQN+kaR+rqk
  Vradi0111s00200.1  1 MILEELYRSGIRTPSASQIQQITTHLSFYGRIEGKNVFYWFQNHKARDRQK 51
                       69************************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.815151IPR001356Homeobox domain
SuperFamilySSF466892.5E-7250IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-4250IPR009057Homeodomain-like
PfamPF000461.5E-12250IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MILEELYRSG IRTPSASQIQ QITTHLSFYG RIEGKNVFYW FQNHKARDRQ KLRRKLTKQL  60
QLQQQQLQLH HCHLTPDITN HYFPYSPSSS TQDFPFYNPP TFLFQGGSAN TSEQALNCAW  120
NVHNLQNNLV EKEEVTFYNN GWSTPVDVNN QASSCCTSRP LKTLDLFPLT TTRTDEDSTT  180
PPPKEL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0111s00200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-164AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014492048.11e-138WUSCHEL-related homeobox 3
TrEMBLA0A1S3TE591e-137A0A1S3TE59_VIGRR; WUSCHEL-related homeobox 3
STRINGXP_007140303.11e-110(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106322940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.18e-27WOX family protein