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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0111s00200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | WOX | ||||||||
Protein Properties | Length: 187aa MW: 21551.1 Da PI: 7.9949 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 46.4 | 6.8e-15 | 2 | 50 | 14 | 57 |
HHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 14 eLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +Leel+++ r+psa+++++++++l +++ ++V++WFqN++a++++ Vradi0111s00200.1 2 ILEELYRSgIRTPSASQIQQITTHLsfygRIEGKNVFYWFQNHKARDRQ 50 8******99*************************************996 PP | |||||||
2 | Wus_type_Homeobox | 93.7 | 1.6e-30 | 1 | 51 | 14 | 64 |
Wus_type_Homeobox 14 kiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +iLeely+sG+rtP++++iq+it++L+ yG+ie+kNVfyWFQN+kaR+rqk Vradi0111s00200.1 1 MILEELYRSGIRTPSASQIQQITTHLSFYGRIEGKNVFYWFQNHKARDRQK 51 69************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 9.815 | 1 | 51 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.5E-7 | 2 | 50 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.2E-4 | 2 | 50 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.5E-12 | 2 | 50 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009943 | Biological Process | adaxial/abaxial axis specification | ||||
GO:0009947 | Biological Process | centrolateral axis specification | ||||
GO:0010865 | Biological Process | stipule development | ||||
GO:0048513 | Biological Process | animal organ development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MILEELYRSG IRTPSASQIQ QITTHLSFYG RIEGKNVFYW FQNHKARDRQ KLRRKLTKQL 60 QLQQQQLQLH HCHLTPDITN HYFPYSPSSS TQDFPFYNPP TFLFQGGSAN TSEQALNCAW 120 NVHNLQNNLV EKEEVTFYNN GWSTPVDVNN QASSCCTSRP LKTLDLFPLT TTRTDEDSTT 180 PPPKEL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0111s00200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 1e-164 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014492048.1 | 1e-138 | WUSCHEL-related homeobox 3 | ||||
TrEMBL | A0A1S3TE59 | 1e-137 | A0A1S3TE59_VIGRR; WUSCHEL-related homeobox 3 | ||||
STRING | XP_007140303.1 | 1e-110 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10632 | 29 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 8e-27 | WOX family protein |