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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0108s00120.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NF-YB | ||||||||
Protein Properties | Length: 203aa MW: 21977.5 Da PI: 6.5146 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 167 | 2.3e-52 | 26 | 123 | 2 | 94 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtse.....asdkcqrekrktingddllwalatlGfedyveplkvylk 88 reqdrflPian+srimkk+lPan+ki+kdaketvqecvsefisf+tse asdkcqrekrktingddllwa+atlGfe+yv+plk+yl+ Vradi0108s00120.1 26 REQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEyaaspASDKCQREKRKTINGDDLLWAMATLGFEEYVDPLKIYLA 117 89********************************************998877789************************************* PP NF-YB 89 kyrele 94 yre + Vradi0108s00120.1 118 SYREGD 123 ***965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.5E-50 | 22 | 134 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 3.46E-35 | 28 | 133 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.0E-24 | 31 | 100 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 5.3E-17 | 59 | 77 | No hit | No description |
PRINTS | PR00615 | 5.3E-17 | 83 | 101 | No hit | No description |
PRINTS | PR00615 | 5.3E-17 | 102 | 120 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MADAPASPGG GGSHESGEHS PRSNFREQDR FLPIANISRI MKKALPANGK IAKDAKETVQ 60 ECVSEFISFI TSEYAASPAS DKCQREKRKT INGDDLLWAM ATLGFEEYVD PLKIYLASYR 120 EGDSKGSAKG GESSSKRDVY PNPNVQLAHQ GSFSQGLLGS CIGDRVVAFF SDFRPQAPGS 180 TTYDCSHARP RVDIDLPETR VI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1n1j_A | 9e-45 | 24 | 121 | 1 | 93 | NF-YB |
4awl_B | 9e-45 | 24 | 121 | 2 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
4csr_A | 9e-45 | 24 | 121 | 2 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0108s00120.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 1e-120 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027934385.1 | 1e-103 | nuclear transcription factor Y subunit B-1-like isoform X2 | ||||
Swissprot | Q8VYK4 | 4e-71 | NFYB8_ARATH; Nuclear transcription factor Y subunit B-8 | ||||
TrEMBL | A0A4D6MXJ7 | 1e-133 | A0A4D6MXJ7_VIGUN; Nuclear transcription factor Y | ||||
STRING | GLYMA19G36220.2 | 5e-94 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2545 | 33 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53340.1 | 9e-63 | nuclear factor Y, subunit B10 |
Publications ? help Back to Top | |||
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