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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0091s00050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | B3 | ||||||||
Protein Properties | Length: 1022aa MW: 113495 Da PI: 7.052 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.1 | 6.6e-18 | 434 | 533 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k l+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ Vradi0091s00050.1 434 FEKMLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWMFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-P 523 89**************************555567778***************9989999999***9.********************876.7 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 e++l +++++ Vradi0091s00050.1 524 EGKLIMGFRK 533 7777777765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.0E-29 | 428 | 542 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.31E-18 | 431 | 534 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.30E-21 | 432 | 533 | No hit | No description |
Pfam | PF02362 | 1.9E-15 | 434 | 533 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.166 | 434 | 535 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-19 | 434 | 534 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 13.245 | 699 | 749 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 5.2E-9 | 704 | 746 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:2000034 | Biological Process | regulation of seed maturation | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1022 aa Download sequence Send to blast |
MHFGASFFLL SYSACTRLLS LSLCFNLSYS LIFSLRLPSI QISLWFLSSV QIQTTFRSHS 60 PPLFHANANP KPHHSRRPHF VETSGDRNFY LRTSGDAERP LEGVELELKM ESRSCMNVAC 120 ATLTTIRWRK GWALRSGEFA DLCDKCGSAY EQSTYCDTFH SNDSGWRECT SCDKRLHCGC 180 IASMSQLELL DTGGVSCISC ARNSGLQPIA INEKPNGSGT SKVIDVSAQQ CTSLANQLNV 240 RGMQGGHYAE NDGLRCWFKP HKIETDGPST EMKPEILPSV GELGSTLISQ FHFESNGSSK 300 ASKAESCKAD TEIRDIYESL AQTNLSMTLA TPIGNSNPFH SSVVDEREQS KTSSLLLGSR 360 SRHLLPKPPR STSGTGLEIN AGMVSQIRVA RPPAEGRGRN QLLPRYWPRI TDQELQQISG 420 EYPTFSNSTI VPLFEKMLSA SDAGRIGRLV LPKACAEAYF PPISQPEGLP LRIQDVKGKE 480 WMFQFRFWPN NNSRMYVLEG VTPCIQSMQL QAGDTVTFSR MDPEGKLIMG FRKATNSTAV 540 QETLPSNMPN GSHSSETSYS GVYENLPILS GYSGLLQSQK GCSETHLNVL SKKWNSAGGD 600 MNWHNIDIPE SRKREGLPLP PVLVPEKKRT RNIGSKSKRL LIDSQDALEL KLTWEEAQDL 660 LRPPPAVKPS IVMIEDQVFE EYEEPPVFGK RSIFVVRSAG VNEQWTQCDS CSKWRKLPVD 720 VLIPPKWTCV ENLWDQSRCS CAAPNELNPR ELDNLLRLNK EFKKQRFAAS QRPALDHESS 780 GLDALANAAI LGDDASESGR TPVVTTTKHP RHRPGCSCIV CIQPPSGKGK HKPTCTCNVC 840 MTVKRRFKTL MMRKKKRQSE REAEIAQRNQ LAWRTKDESE VDSTSRHLTP VDGLENEVRT 900 PSELDPRTPQ DQVAEAAKGQ LDLNCQPDRE EAQTGPNNVS MTSLLEEANL PLETYLKQNG 960 LTSLISEQQT NSASNVQQAQ TTNESEGRQN EDCGTASVIH EQDSSHEDNS GQDKDQNNSL 1020 S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 1e-66 | 408 | 541 | 2 | 131 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 843 | 854 | KRRFKTLMMRKK |
2 | 843 | 856 | KRRFKTLMMRKKKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2. {ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0091s00050.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 0.0 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014490364.1 | 0.0 | B3 domain-containing transcription repressor VAL2 isoform X1 | ||||
Swissprot | Q5CCK4 | 0.0 | VAL2_ARATH; B3 domain-containing transcription repressor VAL2 | ||||
TrEMBL | A0A1S3T9D4 | 0.0 | A0A1S3T9D4_VIGRR; B3 domain-containing transcription repressor VAL2 isoform X1 | ||||
STRING | XP_007134718.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11018 | 32 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 0.0 | HSI2-like 1 |
Publications ? help Back to Top | |||
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