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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0086s00450.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | G2-like | ||||||||
Protein Properties | Length: 379aa MW: 41526.6 Da PI: 6.1158 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 47.5 | 3.9e-15 | 168 | 202 | 21 | 56 |
G2-like 21 LGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 L G +kA+P++ile+m++++Lt+++++SHLQkYR++ Vradi0086s00450.1 168 L-GVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSH 202 6.9*******************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01557 | 5.1E-15 | 167 | 202 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 4.1E-13 | 167 | 205 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.22E-7 | 167 | 205 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0010638 | Biological Process | positive regulation of organelle organization | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MLAVSPLRST RDEEQGEMES FSIGTDDFAD LSEGNLLESI NFDDLFMGIN DDEDVLPDLE 60 MDSEMLAEFS LSEESEIVSS VSVVNNKSDD RNENNMVSTE KQDEVIAANF SSDSGSNSGS 120 SRGEEIASKS EESIHSVVVN PSPKESEKGR KSSTHSRNNP QGKRKVKLGV DKAVPSRILE 180 IMGIDCLTRH NIASHLQKYR SHRKHLLARE AEAARLSQRK QFMGAASVGR GGGGKRDVNP 240 WLPPTMGFPP MTPMHHFRPF HVWGHHTMDQ SFMHMWPKHL PYSPSAPAWP PRTAPSPPPP 300 DPLYWHQHQR APNAPTPGTP CFPPPLASTS KESIDAAISD VLSKPWLPLP LGLKGPAVDG 360 VMGELQRQGI PKIPPSCA* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00022 | PBM | Transfer from AT2G20570 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0086s00450.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014491654.1 | 0.0 | transcription activator GLK1 | ||||
TrEMBL | A0A1S3TD14 | 0.0 | A0A1S3TD14_VIGRR; transcription activator GLK1 | ||||
STRING | XP_007149809.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4242 | 34 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20570.1 | 1e-33 | GBF's pro-rich region-interacting factor 1 |