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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0086s00350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | SBP | ||||||||
Protein Properties | Length: 255aa MW: 28959.5 Da PI: 9.3331 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 125.9 | 1.6e-39 | 128 | 205 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+e+C+adl eak+yhrrhkvCe h++a+vvlv+g++qrfCqqCsrfhelsefD++krsCrrrLa hnerrrk+++ Vradi0086s00350.1 128 CCQAEKCNADLHEAKQYHRRHKVCESHAEAQVVLVHGTKQRFCQQCSRFHELSEFDDAKRSCRRRLAVHNERRRKNSS 205 6**************************************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.7E-31 | 126 | 190 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 30.983 | 126 | 203 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 5.36E-36 | 127 | 206 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 6.4E-31 | 129 | 202 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MNGGASYSEE AHSGRDEARR NLRQRLSADM LRLNEPHKNI IVYSPVTTVT IPPLYHNSHT 60 PSPLFNDSTC HSSMEGLEPK VVVRGERLKR DVDCGDNQKG YVELRQENKK KKKGEGGKKG 120 CVDGGMLCCQ AEKCNADLHE AKQYHRRHKV CESHAEAQVV LVHGTKQRFC QQCSRFHELS 180 EFDDAKRSCR RRLAVHNERR RKNSSDQSQA EGSRHHKGSE VPQMKDIACG QANERGRTHI 240 TIQENSAYKK FEIR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 8e-33 | 125 | 202 | 7 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 108 | 118 | KKKKKGEGGKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Promotes both vegetative phase change and flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16914499}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00634 | PBM | Transfer from PK22320.1 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0086s00350.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040, ECO:0000305|PubMed:16914499}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 1e-149 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022633611.1 | 1e-130 | squamosa promoter-binding-like protein 3 | ||||
Swissprot | Q9S7A9 | 3e-38 | SPL4_ARATH; Squamosa promoter-binding-like protein 4 | ||||
TrEMBL | A0A1S3TD82 | 1e-129 | A0A1S3TD82_VIGRR; squamosa promoter-binding-like protein 3 | ||||
STRING | XP_007149828.1 | 9e-85 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF535 | 34 | 153 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53160.2 | 5e-40 | squamosa promoter binding protein-like 4 |